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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127085 (107 seq.)
>A171001130
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2360831
2360905
+
Glu
TTC
-
¡û
>A171001323
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
782477
782402
-
Glu
TTC
-
¡û
>A171002461
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3552007
3552082
+
Glu
TTC
-
¡û
>A171002726
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1490146
1490072
-
Glu
TTC
-
¡û
>A171003043
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1502022
1502097
+
Glu
TTC
-
¡û
>A171003109
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
3644709
3644634
-
Glu
TTC
-
¡û
>A171003188
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
753360
753286
-
Glu
TTC
-
¡û
>A171003488
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3350296
3350221
-
Glu
TTC
-
¡û
>A171004137
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1621338
1621413
+
Glu
TTC
-
¡û
>A171006914
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2217193
2217268
+
Glu
TTC
-
¡û
>A171006957
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1385734
1385809
+
Glu
TTC
-
¡û
>A171007025
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
400890
400815
-
Glu
TTC
-
¡û
>WENV180318272
OBKM01000252
[OBKM] metagenome; water
7986
7911
-
Glu
TTC
[ENA]
¢þ
>WENV180318634
OBKM01003263
[OBKM] metagenome; water
168
94
-
Glu
TTC
[ENA]
¢þ
>WENV170679768
LFCJ01000360
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
9935
9860
-
Glu
TTC
[ENA]
¢þ
>WENV170679817
LFCJ01000649
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2337
2412
+
Glu
TTC
[ENA]
¢þ
>WENV170679967
LFCJ01001956
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV170679984
LFCJ01002175
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4151
4225
+
Glu
TTC
[ENA]
¢þ
>WENV170680115
LFCJ01004275
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Glu
TTC
[ENA]
¢þ
>WENV170680208
LFCJ01005917
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5725
5651
-
Glu
TTC
[ENA]
¢þ
>WENV170680232
LFCJ01006368
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2639
2562
-
Glu
TTC
[ENA]
¢þ
>WENV170681292
LFFM01000396
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1602
1525
-
Glu
TTC
[ENA]
¢þ
>WENV170681348
LFFM01000544
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5925
6002
+
Glu
TTC
[ENA]
¢þ
>WENV170681452
LFFM01000954
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2832
2755
-
Glu
TTC
[ENA]
¢þ
>WENV170681645
LFFM01001834
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13717
13792
+
Glu
TTC
[ENA]
¢þ
>WENV170681831
LFFM01003320
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6704
6630
-
Glu
TTC
[ENA]
¢þ
>WENV170681933
LFFM01004100
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
514
588
+
Glu
TTC
[ENA]
¢þ
>WENV170702041
LKMJ01000343
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
26603
26526
-
Glu
TTC
[ENA]
¢þ
>WENV170702334
LKMJ01001345
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12715
12789
+
Glu
TTC
[ENA]
¢þ
>WENV170702610
LKMJ01002891
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
15894
15817
-
Glu
TTC
[ENA]
¢þ
>WENV170702837
LKMJ01004329
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7541
7467
-
Glu
TTC
[ENA]
¢þ
>WENV170702965
LKMJ01005119
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
77
2
-
Glu
TTC
[ENA]
¢þ
>WENV170703553
LKMJ01013440
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4387
4313
-
Glu
TTC
[ENA]
¢þ
>WENV170703810
LKMJ01017032
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4893
4970
+
Glu
TTC
[ENA]
¢þ
>WENV170703914
LKMJ01018660
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5579
5504
-
Glu
TTC
[ENA]
¢þ
>WENV170704078
LKMJ01022049
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1464
1539
+
Glu
TTC
[ENA]
¢þ
>PL191000875
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
174605
174679
+
Glu
TTC
[ENA]
¡û
>PL191000889
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
224370
224296
-
Glu
TTC
[ENA]
¡û
>W1910226689
FMZP01000008
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
43436
43361
-
Glu
TTC
[ENA]
¡û
>W1910226902
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1147786
1147712
-
Glu
TTC
[ENA]
¡û
>W1910227142
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
847859
847784
-
Glu
TTC
[ENA]
¡û
>W1910229319
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
343512
343586
+
Glu
TTC
[ENA]
¡û
>W1910229789
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
488918
488992
+
Glu
TTC
[ENA]
¡û
>W1910229896
FOIC01000005
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
180570
180645
+
Glu
TTC
[ENA]
¡û
>W1910229924
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
804552
804478
-
Glu
TTC
[ENA]
¡û
>W1910230252
FOKW01000008
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
13687
13612
-
Glu
TTC
[ENA]
¡û
>W1910230455
FORO01000029
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
16339
16264
-
Glu
TTC
[ENA]
¡û
>W1910230860
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1046247
1046172
-
Glu
TTC
[ENA]
¡û
>W1910340508
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
328622
328697
+
Glu
TTC
[ENA]
¡û
>W1910340537
FTNR01000003
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
62274
62348
+
Glu
TTC
[ENA]
¡û
>W1910568518
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1243000
1243074
+
Glu
TTC
[ENA]
¡û
>W1910569052
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
267690
267615
-
Glu
TTC
[ENA]
¡û
>W1910572575
JMIP02000020
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
192975
193050
+
Glu
TTC
[ENA]
¡û
>W1910572714
JNCS01000005
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
113458
113383
-
Glu
TTC
[ENA]
¡û
>W1910575871
JROF01000005
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
96516
96442
-
Glu
TTC
[ENA]
¡û
>W1910583015
JXAN01000046
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
25898
25973
+
Glu
TTC
[ENA]
¡û
>W1910646111
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1279385
1279460
+
Glu
TTC
[ENA]
¡û
>W1910657575
MASN01000040
Euryarchaeota
Natrialba sp. SSL1 [MASN]
122006
121931
-
Glu
TTC
[ENA]
¡û
>W1910826106
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
421356
421282
-
Glu
TTC
[ENA]
¡û
>W1911433973
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1309261
1309336
+
Glu
TTC
[ENA]
¡û
>W1911493140
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1035829
1035755
-
Glu
TTC
[ENA]
¡û
>W1911572221
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
3265634
3265709
+
Glu
TTC
[ENA]
¡û
>W1911591346
PKKI01000048
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
29947
30022
+
Glu
TTC
[ENA]
¡û
>W1911696801
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
913240
913315
+
Glu
TTC
[ENA]
¡û
>W1911709873
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
196312
196387
+
Glu
TTC
[ENA]
¡û
>W1911709992
QPND01000014
Euryarchaeota
Saliphagus sp. LR7 [QPND]
54692
54766
+
Glu
TTC
[ENA]
¡û
>W1911718007
QQTY01000005
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
305800
305874
+
Glu
TTC
[ENA]
¡û
>W1911749391
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
1092944
1093019
+
Glu
TTC
[ENA]
¡û
>W1610001069
ACIT01000012
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
23860
23935
+
Glu
TTC
[ENA]
¡û
>W1610004055
AGFZ01000064
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
4999
5074
+
Glu
TTC
[ENA]
¡û
>W1610004103
AGIM01000010
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
148954
148879
-
Glu
TTC
[ENA]
¡û
>W1610004117
AGIN01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
526828
526903
+
Glu
TTC
[ENA]
¡û
>W1610005370
AJVG01000005
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
40618
40544
-
Glu
TTC
[ENA]
¡û
>W1610011735
AOHS01000053
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
398
323
-
Glu
TTC
[ENA]
¡û
>W1610011899
AOHW01000007
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
29389
29463
+
Glu
TTC
[ENA]
¡û
>W1610011929
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
58541
58616
+
Glu
TTC
[ENA]
¡û
>W1610012012
AOHY01000057
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
1545
1619
+
Glu
TTC
[ENA]
¡û
>W1610012033
AOHZ01000041
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
115759
115682
-
Glu
TTC
[ENA]
¡û
>W1610012090
AOIA01000136
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
8818
8743
-
Glu
TTC
[ENA]
¡û
>W1610012145
AOIB01000037
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
4706
4632
-
Glu
TTC
[ENA]
¡û
>W1610012180
AOIC01000092
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
16294
16219
-
Glu
TTC
[ENA]
¡û
>W1610012213
AOID01000034
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
19861
19936
+
Glu
TTC
[ENA]
¡û
>W1610012234
AOIE01000003
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
43261
43186
-
Glu
TTC
[ENA]
¡û
>W1610012315
AOII01000091
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
49290
49215
-
Glu
TTC
[ENA]
¡û
>W1610012324
AOIJ01000030
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
40871
40797
-
Glu
TTC
[ENA]
¡û
>W1610012394
AOIK01000029
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
90681
90606
-
Glu
TTC
[ENA]
¡û
>W1610012430
AOIL01000042
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
238626
238549
-
Glu
TTC
[ENA]
¡û
>W1610012464
AOIM01000012
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
131651
131577
-
Glu
TTC
[ENA]
¡û
>W1610012517
AOIN01000062
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
10952
10878
-
Glu
TTC
[ENA]
¡û
>W1610012552
AOIO01000022
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
74991
75065
+
Glu
TTC
[ENA]
¡û
>W1610012618
AOIP01000032
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
284615
284692
+
Glu
TTC
[ENA]
¡û
>W1610012625
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
67582
67657
+
Glu
TTC
[ENA]
¡û
>W1610012692
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
66147
66222
+
Glu
TTC
[ENA]
¡û
>W1610012733
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
327930
327856
-
Glu
TTC
[ENA]
¡û
>W1610012782
AOIT01000035
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
53514
53589
+
Glu
TTC
[ENA]
¡û
>W1610012819
AOIU01000028
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
189946
189869
-
Glu
TTC
[ENA]
¡û
>W1610014439
AOLZ01000075
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
136522
136597
+
Glu
TTC
[ENA]
¡û
>W1610014450
AOMA01000012
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
4753
4679
-
Glu
TTC
[ENA]
¡û
>W1610019037
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
664659
664585
-
Glu
TTC
[ENA]
¡û
>W1610046871
BBCV01000083
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
3384
3458
+
Glu
TTC
[ENA]
¡û
>W1610082968
CBMA010000008
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
162714
162637
-
Glu
TTC
[ENA]
¡û
>W1610083018
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
12249
12174
-
Glu
TTC
[ENA]
¡û
>W1610671363
LKCV01000015
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
8035
8112
+
Glu
TTC
[ENA]
¡û
>W1610682547
LKNC01000100
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
514
588
+
Glu
TTC
[ENA]
¡û
>W1610682589
LKND01000106
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
6704
6630
-
Glu
TTC
[ENA]
¡û
>W1610682626
LKNF01000047
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
13717
13792
+
Glu
TTC
[ENA]
¡û
>W1610682643
LKNG01000004
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
1602
1525
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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