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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127087 (60 seq.)
>A171001145
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2585338
2585263
-
Glu
CTC
-
¡û
>A171001290
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
458937
459011
+
Glu
CTC
-
¡û
>A171003047
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1685246
1685320
+
Glu
CTC
-
¡û
>A171003497
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1721029
1720954
-
Glu
CTC
-
¡û
>A171003733
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2641522
2641596
+
Glu
CTC
-
¡û
>A171004140
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1700898
1700973
+
Glu
CTC
-
¡û
>A171006869
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2817706
2817632
-
Glu
CTC
-
¡û
>A171006962
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1579538
1579612
+
Glu
CTC
-
¡û
>A171007029
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
139996
139921
-
Glu
CTC
-
¡û
>WENV170679538
LFCJ01000015
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
84367
84441
+
Glu
CTC
[ENA]
¢þ
>WENV170679791
LFCJ01000501
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
44
118
+
Glu
CTC
[ENA]
¢þ
>WENV170679922
LFCJ01001595
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
47
122
+
Glu
CTC
[ENA]
¢þ
>WENV170679953
LFCJ01001901
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
51
125
+
Glu
CTC
[ENA]
¢þ
>WENV170680111
LFCJ01004179
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
389
315
-
Glu
CTC
[ENA]
¢þ
>WENV170680180
LFCJ01005303
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
121
47
-
Glu
CTC
[ENA]
¢þ
>WENV170680223
LFCJ01006241
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
41
115
+
Glu
CTC
[ENA]
¢þ
>WENV170681184
LFFM01000186
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20893
20967
+
Glu
CTC
[ENA]
¢þ
>WENV170681369
LFFM01000615
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9728
9653
-
Glu
CTC
[ENA]
¢þ
>WENV170681883
LFFM01003855
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3297
3220
-
Glu
CTC
[ENA]
¢þ
>WENV170683377
LFIK01010210
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7289
7214
-
Glu
CTC
[ENA]
¢þ
>WENV170702118
LKMJ01000550
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
53
127
+
Glu
CTC
[ENA]
¢þ
>WENV170702437
LKMJ01001944
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18591
18665
+
Glu
CTC
[ENA]
¢þ
>WENV170704157
LKMJ01023899
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
52
126
+
Glu
CTC
[ENA]
¢þ
>PL191000879
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
415362
415436
+
Glu
CTC
[ENA]
¡û
>W1910226712
FMZP01000043
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
9069
9143
+
Glu
CTC
[ENA]
¡û
>W1910226719
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
100172
100098
-
Glu
CTC
[ENA]
¡û
>W1910228523
FNQT01000002
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
289181
289107
-
Glu
CTC
[ENA]
¡û
>W1910229714
FOCX01000027
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
1913
1839
-
Glu
CTC
[ENA]
¡û
>W1910229793
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
807131
807056
-
Glu
CTC
[ENA]
¡û
>W1910229897
FOIC01000005
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
232418
232492
+
Glu
CTC
[ENA]
¡û
>W1910340529
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
183058
183132
+
Glu
CTC
[ENA]
¡û
>W1910568522
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1483778
1483852
+
Glu
CTC
[ENA]
¡û
>W1910572569
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
367549
367474
-
Glu
CTC
[ENA]
¡û
>W1910646143
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1443365
1443291
-
Glu
CTC
[ENA]
¡û
>W1910657548
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
233612
233686
+
Glu
CTC
[ENA]
¡û
>W1911434001
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2186864
2186790
-
Glu
CTC
[ENA]
¡û
>W1911709175
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2267125
2267051
-
Glu
CTC
[ENA]
¡û
>SRA1001243
SRR001057.13154
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
91
17
-
Glu
CTC
[SRA]
>W1610001059
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
290481
290407
-
Glu
CTC
[ENA]
¡û
>W1610004143
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
129685
129759
+
Glu
CTC
[ENA]
¡û
>W1610011709
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
64948
65022
+
Glu
CTC
[ENA]
¡û
>W1610011933
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
176134
176208
+
Glu
CTC
[ENA]
¡û
>W1610011976
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
19184
19110
-
Glu
CTC
[ENA]
¡û
>W1610012055
AOHZ01000091
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
6270
6195
-
Glu
CTC
[ENA]
¡û
>W1610012086
AOIA01000121
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
13417
13342
-
Glu
CTC
[ENA]
¡û
>W1610012141
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
20535
20460
-
Glu
CTC
[ENA]
¡û
>W1610012259
AOIE01000080
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
36366
36440
+
Glu
CTC
[ENA]
¡û
>W1610012518
AOIN01000064
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
109732
109657
-
Glu
CTC
[ENA]
¡û
>W1610012696
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
248453
248527
+
Glu
CTC
[ENA]
¡û
>W1610012783
AOIT01000035
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
112623
112697
+
Glu
CTC
[ENA]
¡û
>W1610014594
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
29621
29696
+
Glu
CTC
[ENA]
¡û
>W1610014626
AOME01000056
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
38308
38234
-
Glu
CTC
[ENA]
¡û
>W1610020289
ASGZ01000023
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
8825
8750
-
Glu
CTC
[ENA]
¡û
>W1610024355
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
9282
9358
+
Glu
CTC
[ENA]
¡û
>W1610040539
BAFM01000006
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
19559
19633
+
Glu
CTC
[ENA]
¡û
>W1610671366
LKCV01000019
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
15796
15871
+
Glu
CTC
[ENA]
¡û
>W1610675782
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56519
56444
-
Glu
CTC
[ENA]
¡û
>W1610675783
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56277
56203
-
Glu
CTC
[ENA]
¡û
>W1610682566
LKND01000016
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
20893
20967
+
Glu
CTC
[ENA]
¡û
>W1610682685
LKNH01000094
Euryarchaeota
Halobacteriaceae archaeon Tc-Br11_E2g27 [LKNH]
3297
3220
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK