This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127135 (44 seq.)
>A171002248
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2209748
2209824
+
Glu
TTC
-
¡û
>A171004018
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339313
339237
-
Glu
TTC
-
¡û
>A171005548
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1408706
1408629
-
Glu
TTC
-
¡û
>A171005549
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1407678
1407601
-
Glu
TTC
-
¡û
>A171007314
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716146
1716222
+
Glu
TTC
-
¡û
>A171007344
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
964915
964991
+
Glu
TTC
-
¡û
>A171007396
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096683
2096759
+
Glu
TTC
-
¡û
>WENV180037495
FVAA011132156
[FVAA] soil metagenome; Soil
2
80
+
Glu
TTC
[ENA]
¢þ
>WENV180240513
OBDD01004739
[OBDD] human gut metagenome; human gut
347
423
+
Glu
TTC
[ENA]
¢þ
>WENV180335715
OBLG01000200
[OBLG] human gut metagenome; human gut
14881
14957
+
Glu
TTC
[ENA]
¢þ
>WENV181230060
OFEK01000232
[OFEK] activated sludge metagenome; Anaerobic digester
73152
73076
-
Glu
TTC
[ENA]
¢þ
>WENV181336431
OFMD01000667
[OFMD] human gut metagenome; human gut
12831
12907
+
Glu
TTC
[ENA]
¢þ
>WENV182127120
OHJU01004921
[OHJU] human gut metagenome; feces
1641
1717
+
Glu
TTC
[ENA]
¢þ
>WENV182180425
OHNO01000915
[OHNO] human gut metagenome; feces
355
431
+
Glu
TTC
[ENA]
¢þ
>WENV182899658
OKST01000470
[OKST] human gut metagenome; feces
17288
17364
+
Glu
TTC
[ENA]
¢þ
>WENV183172469
OLPC01013106
[OLPC] human gut metagenome; faeces
966
890
-
Glu
TTC
[ENA]
¢þ
>WENV183293063
OLSK01000009
[OLSK] human gut metagenome; faeces
12876
12952
+
Glu
TTC
[ENA]
¢þ
>WENV183308004
OLTU01004675
[OLTU] human gut metagenome; faeces
450
374
-
Glu
TTC
[ENA]
¢þ
>WENV183382507
OLYL01002045
[OLYL] human gut metagenome; feces
5621
5697
+
Glu
TTC
[ENA]
¢þ
>WENV183519565
OMNT01001120
[OMNT] human gut metagenome; faeces
13112
13036
-
Glu
TTC
[ENA]
¢þ
>WENV183774929
PPYF01064685
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17899
17975
+
Glu
TTC
[ENA]
¢þ
>WENV183786498
PPYF01304711
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10263
10187
-
Glu
TTC
[ENA]
¢þ
>WENV170021462
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1968
1892
-
Glu
TTC
[ENA]
¢þ
>At2069
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
1335580
1335654
+
Glu
TTC
[Ensembl]
¡û
>WENV170671062
LAHU01010551
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3822
3746
-
Glu
TTC
[ENA]
¢þ
>WENV170677320
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4547
4623
+
Glu
TTC
[ENA]
¢þ
>WENV170972557
MTKX01034777
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
508
432
-
Glu
TTC
[ENA]
¢þ
>WENV170976348
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2345
2421
+
Glu
TTC
[ENA]
¢þ
>W1910230890
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
156928
157005
+
Glu
TTC
[ENA]
¡û
>W1910230891
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
157434
157511
+
Glu
TTC
[ENA]
¡û
>W1910570715
JJPU01000085
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
4578
4501
-
Glu
TTC
[ENA]
¡û
>W1910570716
JJPU01000085
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
3923
3846
-
Glu
TTC
[ENA]
¡û
>W1910571276
JJQF01000058
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
9896
9973
+
Glu
TTC
[ENA]
¡û
>W1910571277
JJQF01000058
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
10551
10628
+
Glu
TTC
[ENA]
¡û
>W1910572088
JJQU01000148
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
9306
9229
-
Glu
TTC
[ENA]
¡û
>W1910572089
JJQU01000148
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
8651
8574
-
Glu
TTC
[ENA]
¡û
>W1910635236
LMVP01000050
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
2491
2566
+
Glu
TTC
[ENA]
¡û
>W1910635237
LMVP01000050
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
3007
3084
+
Glu
TTC
[ENA]
¡û
>W1610006214
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13714
13638
-
Glu
TTC
[ENA]
¡û
>W1610011022
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50133
50057
-
Glu
TTC
[ENA]
¡û
>W1610049152
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
95993
96069
+
Glu
TTC
[ENA]
¡û
>W1610612486
LGEU01000045
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
6375
6296
-
Glu
TTC
[ENA]
¡û
>W1610613874
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4547
4623
+
Glu
TTC
[ENA]
¡û
>ENV000764
AM114193
Environmental sample from ENV division of INSDC
1335580
1335657
+
Glu
TTC
[Ensembl]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK