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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127153 (78 seq.)
>W1710877164
LMPW01000011
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
299466
299541
+
Val
TAC
[ENA]
¡û
>W1710877189
LMPW01000015
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
341303
341380
+
Val
TAC
[ENA]
¡û
>W1711047424
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92318
92395
+
Val
TAC
[ENA]
¡û
>W1711047425
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92442
92519
+
Val
TAC
[ENA]
¡û
>W1711047426
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92541
92618
+
Val
TAC
[ENA]
¡û
>W1711047427
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92664
92741
+
Val
TAC
[ENA]
¡û
>W1711047428
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92769
92846
+
Val
TAC
[ENA]
¡û
>W1711583715
MNXO01000037
Bacteroidota
Bacteroidetes bacterium CG2_30_32_10 [MNXO]
1016
1093
+
Val
TAC
[ENA]
¡û
>W1711628533
MPOG01000013
Bacteroidota
Elizabethkingia meningoseptica [MPOG]
50781
50706
-
Val
TAC
[ENA]
¡û
>C171016661
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
227489
227564
+
Val
TAC
-
¡û
>C171016681
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
2990938
2991013
+
Val
TAC
-
¡û
>C171067520
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
140850
140773
-
Val
TAC
-
¡û
>C171067523
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
140535
140460
-
Val
TAC
-
¡û
>W131002799
AGZL01000001
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
139641
139718
+
Val
TAC
[ENA]
¡û
>W131002802
AGZL01000001
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
139956
140031
+
Val
TAC
[ENA]
¡û
>W131229173
AUGP01000016
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
234040
233965
-
Val
TAC
[ENA]
¡û
>W131229195
AUGP01000018
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
18587
18664
+
Val
TAC
[ENA]
¡û
>W141008115
AGZJ01000053
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
63584
63661
+
Val
TAC
[ENA]
¡û
>W141008116
AGZJ01000054
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
18
95
+
Val
TAC
[ENA]
¡û
>W141008145
AGZK01000025
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
85490
85415
-
Val
TAC
[ENA]
¡û
>W141008148
AGZK01000026
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
140
63
-
Val
TAC
[ENA]
¡û
>WENV180590546
OCOT01063533
[OCOT] marine metagenome; ENVO:00002010
193
268
+
Val
TAC
[ENA]
¢þ
>WENV180636132
OCRE01064299
[OCRE] marine metagenome; Seawater
123
48
-
Val
TAC
[ENA]
¢þ
>WENV181126271
OEFV01033161
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
56
131
+
Val
TAC
[ENA]
¢þ
>WENV181168410
OEIU01338639
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17
94
+
Val
TAC
[ENA]
¢þ
>WENV181399432
OFSE01031846
[OFSE] wastewater metagenome; Exp Tend VB 50WW
733
808
+
Val
TAC
[ENA]
¢þ
>WENV181838510
OGVN01001704
[OGVN] freshwater metagenome; freshwater
1057
982
-
Val
TAC
[ENA]
¢þ
>WENV170379784
CETV01218941
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
375
+
Val
TAC
[ENA]
¢þ
>WENV170570390
FLOH01000002
[FLOH] marine metagenome; water
284954
284877
-
Val
TAC
[ENA]
¢þ
>WENV170595756
FUFK011958129
[FUFK] metagenome; unknown
162
239
+
Val
TAC
[ENA]
¢þ
>WENV170622378
FUWD013100683
[FUWD] metagenome; unknown
130
207
+
Val
TAC
[ENA]
¢þ
>WENV170630602
FUWD013315103
[FUWD] metagenome; unknown
130
207
+
Val
TAC
[ENA]
¢þ
>C181175900
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3939435
3939510
+
Val
TAC
-
¡û
>C181175905
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
3000918
3000841
-
Val
TAC
-
¡û
>C191153102
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
125086
125011
-
Val
TAC
-
¡û
>C191153105
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
124771
124696
-
Val
TAC
-
¡û
>C191161908
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
1266783
1266708
-
Val
TAC
-
¡û
>W1910577938
JUIW01000001
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
14084
14159
+
Val
TAC
[ENA]
¡û
>W1910577942
JUIW01000002
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
105137
105212
+
Val
TAC
[ENA]
¡û
>W1911243251
NSGJ01000022
Bacteroidota
Myroides sp. N17-2 [NSGJ]
28815
28740
-
Val
TAC
[ENA]
¡û
>W1911243277
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
13879
13956
+
Val
TAC
[ENA]
¡û
>W1911243278
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14000
14077
+
Val
TAC
[ENA]
¡û
>W1911243279
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14105
14180
+
Val
TAC
[ENA]
¡û
>W1911243281
NSGJ01000047
Bacteroidota
Myroides sp. N17-2 [NSGJ]
14314
14389
+
Val
TAC
[ENA]
¡û
>W1810762842
QQAR01000002
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
167728
167651
-
Val
TAC
[ENA]
¡û
>W1810762847
QQAR01000004
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
259256
259181
-
Val
TAC
[ENA]
¡û
>C151067034
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
212845
212768
-
Val
TAC
[Ensembl]
¡û
>C151067037
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
212530
212455
-
Val
TAC
[Ensembl]
¡û
>WENV030938
AACY021324296
Marine microbial communities from Global Ocean Sampling (GOS)
126
49
-
Val
TAC
[ENA]
>C161042817
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
227463
227538
+
Val
TAC
-
¡û
>C161042837
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
2990938
2991013
+
Val
TAC
-
¡û
>W1610061528
BCMQ01000030
Bacteroidota
Myroides odoratimimus [BCMQ]
19378
19455
+
Val
TAC
[ENA]
¡û
>W1610061531
BCMQ01000030
Bacteroidota
Myroides odoratimimus [BCMQ]
19693
19768
+
Val
TAC
[ENA]
¡û
>W121009098
AGEC01000011
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
83168
83093
-
Val
TAC
[ENA]
¡û
>W121009104
AGEC01000012
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
140
63
-
Val
TAC
[ENA]
¡û
>W121009252
AGEE01000039
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
98852
98777
-
Val
TAC
[ENA]
¡û
>W121034517
AHKQ01000030
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
64660
64737
+
Val
TAC
[ENA]
¡û
>W121124100
BAEX01000009
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
7151
7074
-
Val
TAC
[ENA]
¡û
>W121124101
BAEX01000009
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
7026
6949
-
Val
TAC
[ENA]
¡û
>W121124112
BAEX01000021
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
19880
19803
-
Val
TAC
[ENA]
¡û
>W1610535117
JRLY01000001
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
193689
193614
-
Val
TAC
[ENA]
¡û
>W1610535148
JRLY01000035
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
1030
953
-
Val
TAC
[ENA]
¡û
>W1610888553
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92318
92395
+
Val
TAC
[ENA]
¡û
>W1610888554
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92442
92519
+
Val
TAC
[ENA]
¡û
>W1610888555
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92541
92618
+
Val
TAC
[ENA]
¡û
>W1610888556
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92664
92741
+
Val
TAC
[ENA]
¡û
>W1610888557
LROZ01000015
Bacteroidota
Myroides odoratus [LROZ]
92769
92846
+
Val
TAC
[ENA]
¡û
>W1710059193
BCMQ01000030
Bacteroidota
Myroides odoratimimus [BCMQ]
19378
19455
+
Val
TAC
[ENA]
¡û
>W1710059196
BCMQ01000030
Bacteroidota
Myroides odoratimimus [BCMQ]
19693
19768
+
Val
TAC
[ENA]
¡û
>W1710566250
FORU01000017
Bacteroidota
Myroides guanonis [FORU]
68923
68846
-
Val
TAC
[ENA]
¡û
>W1710566253
FORU01000020
Bacteroidota
Myroides guanonis [FORU]
77
2
-
Val
TAC
[ENA]
¡û
>W1710574109
FOYA01000003
Bacteroidota
Flavobacterium akiainvivens [FOYA]
318329
318404
+
Val
TAC
[ENA]
¡û
>W1710574136
FOYA01000027
Bacteroidota
Flavobacterium akiainvivens [FOYA]
8939
8864
-
Val
TAC
[ENA]
¡û
>W1710591204
FRBO01000004
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
21529
21606
+
Val
TAC
[ENA]
¡û
>W1710591207
FRBO01000004
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
21844
21919
+
Val
TAC
[ENA]
¡û
>W1710595893
FTMF01000008
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
449
372
-
Val
TAC
[ENA]
¡û
>W1710637353
JRLY01000001
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
193689
193614
-
Val
TAC
[ENA]
¡û
>W1710637384
JRLY01000035
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
1030
953
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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