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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127164 (36 seq.)
>A171000488
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1834330
1834407
+
Lys
CTT
-
¡û
>A171000711
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1158815
1158738
-
Lys
CTT
-
¡û
>A171001872
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1051160
1051237
+
Lys
CTT
-
¡û
>A171002179
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1767543
1767466
-
Lys
CTT
-
¡û
>A171002298
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1029313
1029390
+
Lys
CTT
-
¡û
>A171002685
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1104874
1104797
-
Lys
CTT
-
¡û
>A171003275
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1277259
1277336
+
Lys
CTT
-
¡û
>A171003375
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1186584
1186507
-
Lys
CTT
-
¡û
>A171003865
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
155540
155617
+
Lys
CTT
-
¡û
>A171004043
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1192232
1192309
+
Lys
CTT
-
¡û
>A171004242
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
346463
346386
-
Lys
CTT
-
¡û
>A171004271
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
806759
806836
+
Lys
CTT
-
¡û
>A171004456
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1902619
1902696
+
Lys
CTT
-
¡û
>A171005891
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1842220
1842143
-
Lys
CTT
-
¡û
>A171006350
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
532082
532159
+
Lys
CTT
-
¡û
>A171006472
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1195418
1195495
+
Lys
CTT
-
¡û
>A171006611
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
525029
524952
-
Lys
CTT
-
¡û
>A171007506
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1496030
1496107
+
Lys
CTT
-
¡û
>At1793
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
795024
795101
+
Lys
CTT
[Ensembl]
¡û
>At1858
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1388171
1388094
-
Lys
CTT
[Ensembl]
¡û
>At1901
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1181115
1181038
-
Lys
CTT
[Ensembl]
¡û
>At1918
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
260557
260634
+
Lys
CTT
[Ensembl]
¡û
>WENV170675988
LDZQ01001636
[LDZQ] terrestrial metagenome; oil reservoir sample I2
6157
6080
-
Lys
CTT
[ENA]
¢þ
>WENV170676195
LDZR01001570
[LDZR] terrestrial metagenome; oil reservoir sample K2
144
221
+
Lys
CTT
[ENA]
¢þ
>WENV170676319
LDZR01002241
[LDZR] terrestrial metagenome; oil reservoir sample K2
34043
33966
-
Lys
CTT
[ENA]
¢þ
>WENV170676409
LDZR01002535
[LDZR] terrestrial metagenome; oil reservoir sample K2
374
451
+
Lys
CTT
[ENA]
¢þ
>WENV170676743
LDZS01002107
[LDZS] terrestrial metagenome; oil reservoir sample K3
1377
1454
+
Lys
CTT
[ENA]
¢þ
>W1910200304
FJMQ01000005
Euryarchaeota
Thermococcus litoralis [FJMQ]
6261
6184
-
Lys
CTT
[ENA]
¡û
>W1610000733
ABSF01000013
Euryarchaeota
Thermococcus barophilus MP [ABSF]
326998
326921
-
Lys
CTT
[ENA]
¡û
>W1610000896
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
346618
346695
+
Lys
CTT
[ENA]
¡û
>W1610004916
AHVB01000032
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
5391
5314
-
Lys
CTT
[ENA]
¡û
>W1610046830
BBCU01000015
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
978
1055
+
Lys
CTT
[ENA]
¡û
>W1610548860
JXCG01000003
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
20320
20397
+
Lys
CTT
[ENA]
¡û
>W1610612450
LGET01000095
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
6157
6080
-
Lys
CTT
[ENA]
¡û
>W1610612824
LGFD01000020
Euryarchaeota
Thermococcus sibiricus [LGFD]
34043
33966
-
Lys
CTT
[ENA]
¡û
>W1610613055
LGFJ01000078
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
1377
1454
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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