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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127165 (39 seq.)
>A171000187
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
102041
102118
+
Arg
GCG
-
¡û
>A171000490
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1878136
1878213
+
Arg
GCG
-
¡û
>A171000715
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
390644
390567
-
Arg
GCG
-
¡û
>A171001864
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
210416
210493
+
Arg
GCG
-
¡û
>A171002305
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1644425
1644502
+
Arg
GCG
-
¡û
>A171002597
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
891521
891444
-
Arg
GCG
-
¡û
>A171002661
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1196260
1196337
+
Arg
GCG
-
¡û
>A171003261
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
595563
595640
+
Arg
GCG
-
¡û
>A171003336
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
532603
532526
-
Arg
GCG
-
¡û
>A171003789
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1271843
1271766
-
Arg
GCG
-
¡û
>A171003868
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
462130
462207
+
Arg
GCG
-
¡û
>A171004035
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
319538
319615
+
Arg
GCG
-
¡û
>A171004239
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
479784
479707
-
Arg
GCG
-
¡û
>A171004291
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1921688
1921611
-
Arg
GCG
-
¡û
>A171004445
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
981945
982022
+
Arg
GCG
-
¡û
>A171006377
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
301288
301211
-
Arg
GCG
-
¡û
>A171006464
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
244481
244558
+
Arg
GCG
-
¡û
>A171006601
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1444207
1444130
-
Arg
GCG
-
¡û
>A171006668
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1194598
1194521
-
Arg
GCG
-
¡û
>A171007090
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
213128
213205
+
Arg
GCG
-
¡û
>At1930
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1311255
1311332
+
Arg
GCG
[Ensembl]
¡û
>WENV170675974
LDZQ01001546
[LDZQ] terrestrial metagenome; oil reservoir sample I2
13538
13461
-
Arg
GCG
[ENA]
¢þ
>WENV170676189
LDZR01001521
[LDZR] terrestrial metagenome; oil reservoir sample K2
11510
11433
-
Arg
GCG
[ENA]
¢þ
>WENV170676316
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
19674
19597
-
Arg
GCG
[ENA]
¢þ
>WENV170676723
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
28568
28491
-
Arg
GCG
[ENA]
¢þ
>W1910200314
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
7280
7357
+
Arg
GCG
[ENA]
¡û
>W1910229990
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
515597
515520
-
Arg
GCG
[ENA]
¡û
>W1910597261
LANF01000007
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
87631
87708
+
Arg
GCG
[ENA]
¡û
>W1610000716
ABSF01000008
Euryarchaeota
Thermococcus barophilus MP [ABSF]
21906
21829
-
Arg
GCG
[ENA]
¡û
>W1610000904
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
255232
255155
-
Arg
GCG
[ENA]
¡û
>W1610004922
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
3347
3424
+
Arg
GCG
[ENA]
¡û
>W1610005305
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
6539
6462
-
Arg
GCG
[ENA]
¡û
>W1610005597
AKID01000115
Euryarchaeota
Thermococcus sp. PK [AKID]
18754
18677
-
Arg
GCG
[ENA]
¡û
>W1610548868
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
101961
102038
+
Arg
GCG
[ENA]
¡û
>W1610612436
LGET01000005
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
13538
13461
-
Arg
GCG
[ENA]
¡û
>W1610612821
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
19674
19597
-
Arg
GCG
[ENA]
¡û
>W1610613035
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
28568
28491
-
Arg
GCG
[ENA]
¡û
>W1610638248
LIXN01000018
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
49552
49475
-
Arg
GCG
[ENA]
¡û
>W1610717920
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
58128
58051
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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