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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127166 (46 seq.)
>A171000190
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
192913
192990
+
Met
CAT
-
¡û
>A171000487
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1769527
1769604
+
Met
CAT
-
¡û
>A171000718
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
370799
370722
-
Met
CAT
-
¡û
>A171001897
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
195170
195093
-
Met
CAT
-
¡û
>A171002160
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
67487
67564
+
Met
CAT
-
¡û
>A171002286
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
268591
268668
+
Met
CAT
-
¡û
>A171002569
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
760860
760937
+
Met
CAT
-
¡û
>A171002683
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1225701
1225624
-
Met
CAT
-
¡û
>A171003277
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1378126
1378203
+
Met
CAT
-
¡û
>A171003303
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
405516
405593
+
Met
CAT
-
¡û
>A171003377
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1085230
1085153
-
Met
CAT
-
¡û
>A171003798
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
462181
462106
-
Met
CAT
-
¡û
>A171003871
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
481995
482072
+
Met
CAT
-
¡û
>A171004067
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
303537
303460
-
Met
CAT
-
¡û
>A171004210
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
453689
453766
+
Met
CAT
-
¡û
>A171004304
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
11219
11142
-
Met
CAT
-
¡û
>A171004450
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1061677
1061754
+
Met
CAT
-
¡û
>A171005893
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1725576
1725499
-
Met
CAT
-
¡û
>A171006380
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
282048
281971
-
Met
CAT
-
¡û
>A171006497
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
228321
228244
-
Met
CAT
-
¡û
>A171006597
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1529169
1529092
-
Met
CAT
-
¡û
>A171006665
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1332329
1332252
-
Met
CAT
-
¡û
>A171007094
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
340012
340089
+
Met
CAT
-
¡û
>A171007508
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1587654
1587731
+
Met
CAT
-
¡û
>WENV170675984
LDZQ01001625
[LDZQ] terrestrial metagenome; oil reservoir sample I2
4462
4539
+
Met
CAT
[ENA]
¢þ
>WENV170676201
LDZR01001692
[LDZR] terrestrial metagenome; oil reservoir sample K2
9
86
+
Met
CAT
[ENA]
¢þ
>WENV170676293
LDZR01002225
[LDZR] terrestrial metagenome; oil reservoir sample K2
9
86
+
Met
CAT
[ENA]
¢þ
>WENV170676726
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
8723
8646
-
Met
CAT
[ENA]
¢þ
>At1807
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
630660
630583
-
Met
CAT
[Ensembl]
¡û
>At1855
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1287370
1287293
-
Met
CAT
[Ensembl]
¡û
>At1888
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1329802
1329879
+
Met
CAT
[Ensembl]
¡û
>At1948
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1127977
1127900
-
Met
CAT
[Ensembl]
¡û
>W1910200317
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
28824
28901
+
Met
CAT
[ENA]
¡û
>W1910229976
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
392768
392845
+
Met
CAT
[ENA]
¡û
>W1910597266
LANF01000009
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
201495
201419
-
Met
CAT
[ENA]
¡û
>W1610000702
ABSF01000002
Euryarchaeota
Thermococcus barophilus MP [ABSF]
42455
42378
-
Met
CAT
[ENA]
¡û
>W1610000894
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
225791
225868
+
Met
CAT
[ENA]
¡û
>W1610004907
AHVB01000009
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
352
429
+
Met
CAT
[ENA]
¡û
>W1610005271
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
154359
154436
+
Met
CAT
[ENA]
¡û
>W1610005593
AKID01000114
Euryarchaeota
Thermococcus sp. PK [AKID]
8525
8448
-
Met
CAT
[ENA]
¡û
>W1610548871
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
126004
126081
+
Met
CAT
[ENA]
¡û
>W1610612446
LGET01000084
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
4462
4539
+
Met
CAT
[ENA]
¡û
>W1610612798
LGFD01000004
Euryarchaeota
Thermococcus sibiricus [LGFD]
9
86
+
Met
CAT
[ENA]
¡û
>W1610613038
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
8723
8646
-
Met
CAT
[ENA]
¡û
>W1610638225
LIXN01000006
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
125584
125661
+
Met
CAT
[ENA]
¡û
>W1610717924
LLYW01000016
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
20
97
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK