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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127174 (21 seq.)
>A171000696
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
998347
998424
+
Lys
TTT
-
¡û
>A171001882
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1786197
1786120
-
Lys
TTT
-
¡û
>A171003804
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
12857
12780
-
Lys
TTT
-
¡û
>A171003884
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
2176218
2176295
+
Lys
TTT
-
¡û
>A171004052
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1865578
1865501
-
Lys
TTT
-
¡û
>A171006351
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1070927
1071004
+
Lys
TTT
-
¡û
>A171006479
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2068722
2068645
-
Lys
TTT
-
¡û
>WENV170675978
LDZQ01001554
[LDZQ] terrestrial metagenome; oil reservoir sample I2
32
109
+
Lys
TTT
[ENA]
¢þ
>WENV170676198
LDZR01001624
[LDZR] terrestrial metagenome; oil reservoir sample K2
382
305
-
Lys
TTT
[ENA]
¢þ
>WENV170676287
LDZR01002222
[LDZR] terrestrial metagenome; oil reservoir sample K2
79667
79744
+
Lys
TTT
[ENA]
¢þ
>WENV170676302
LDZR01002228
[LDZR] terrestrial metagenome; oil reservoir sample K2
11
88
+
Lys
TTT
[ENA]
¢þ
>WENV170676716
LDZS01002034
[LDZS] terrestrial metagenome; oil reservoir sample K3
15501
15424
-
Lys
TTT
[ENA]
¢þ
>W1910200344
FJMQ01000164
Euryarchaeota
Thermococcus litoralis [FJMQ]
57365
57442
+
Lys
TTT
[ENA]
¡û
>W1910597283
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
102558
102481
-
Lys
TTT
[ENA]
¡û
>W1610000710
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
2626
2549
-
Lys
TTT
[ENA]
¡û
>W1610004949
AHVB01000076
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
38602
38525
-
Lys
TTT
[ENA]
¡û
>W1610005596
AKID01000115
Euryarchaeota
Thermococcus sp. PK [AKID]
47706
47629
-
Lys
TTT
[ENA]
¡û
>W1610612440
LGET01000013
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
32
109
+
Lys
TTT
[ENA]
¡û
>W1610612792
LGFD01000001
Euryarchaeota
Thermococcus sibiricus [LGFD]
79667
79744
+
Lys
TTT
[ENA]
¡û
>W1610612807
LGFD01000007
Euryarchaeota
Thermococcus sibiricus [LGFD]
11
88
+
Lys
TTT
[ENA]
¡û
>W1610613028
LGFJ01000005
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
15501
15424
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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