This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127175 (31 seq.)
>A171000225
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
101935
101858
-
Gly
GCC
-
¡û
>A171000699
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1269223
1269300
+
Gly
GCC
-
¡û
>A171001895
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
210325
210248
-
Gly
GCC
-
¡û
>A171002571
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
891628
891705
+
Gly
GCC
-
¡û
>A171003307
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
532709
532786
+
Gly
GCC
-
¡û
>A171003796
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
655090
655013
-
Gly
GCC
-
¡û
>A171003887
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1681949
1681872
-
Gly
GCC
-
¡û
>A171004065
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
319447
319370
-
Gly
GCC
-
¡û
>A171006362
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1283723
1283646
-
Gly
GCC
-
¡û
>A171006495
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
244390
244313
-
Gly
GCC
-
¡û
>A171006652
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1194704
1194781
+
Gly
GCC
-
¡û
>A171007122
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
213023
212946
-
Gly
GCC
-
¡û
>WENV170675971
LDZQ01001544
[LDZQ] terrestrial metagenome; oil reservoir sample I2
13780
13857
+
Gly
GCC
[ENA]
¢þ
>WENV170676026
LDZR01000247
[LDZR] terrestrial metagenome; oil reservoir sample K2
9
86
+
Gly
GCC
[ENA]
¢þ
>WENV170676197
LDZR01001602
[LDZR] terrestrial metagenome; oil reservoir sample K2
3110
3187
+
Gly
GCC
[ENA]
¢þ
>WENV170676306
LDZR01002231
[LDZR] terrestrial metagenome; oil reservoir sample K2
44819
44742
-
Gly
GCC
[ENA]
¢þ
>WENV170676495
LDZS01000189
[LDZS] terrestrial metagenome; oil reservoir sample K3
89
12
-
Gly
GCC
[ENA]
¢þ
>W1910200334
FJMQ01000132
Euryarchaeota
Thermococcus litoralis [FJMQ]
3991
3914
-
Gly
GCC
[ENA]
¡û
>W1910229980
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
515702
515779
+
Gly
GCC
[ENA]
¡û
>W1910597263
LANF01000009
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
35222
35299
+
Gly
GCC
[ENA]
¡û
>W1610000713
ABSF01000008
Euryarchaeota
Thermococcus barophilus MP [ABSF]
21997
22074
+
Gly
GCC
[ENA]
¡û
>W1610004936
AHVB01000063
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
6129
6206
+
Gly
GCC
[ENA]
¡û
>W1610004943
AHVB01000070
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
62262
62185
-
Gly
GCC
[ENA]
¡û
>W1610005290
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
7961
8038
+
Gly
GCC
[ENA]
¡û
>W1610005560
AKID01000004
Euryarchaeota
Thermococcus sp. PK [AKID]
17288
17365
+
Gly
GCC
[ENA]
¡û
>W1610045069
BBBB01000001
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
205070
204993
-
Gly
GCC
[ENA]
¡û
>W1610548886
JXCG01000010
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
41798
41721
-
Gly
GCC
[ENA]
¡û
>W1610612433
LGET01000003
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
13780
13857
+
Gly
GCC
[ENA]
¡û
>W1610612811
LGFD01000010
Euryarchaeota
Thermococcus sibiricus [LGFD]
44819
44742
-
Gly
GCC
[ENA]
¡û
>W1610638244
LIXN01000018
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
49657
49734
+
Gly
GCC
[ENA]
¡û
>W1610717913
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
58235
58312
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK