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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127182 (42 seq.)
>A171000217
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1148116
1148039
-
Gly
TCC
-
¡û
>A171000510
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
334591
334514
-
Gly
TCC
-
¡û
>A171001874
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1113213
1113290
+
Gly
TCC
-
¡û
>A171001885
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1746015
1745938
-
Gly
CCC
-
¡û
>A171002184
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1497720
1497643
-
Gly
CCC
-
¡û
>A171002191
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
609400
609323
-
Gly
TCC
-
¡û
>A171002309
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1255862
1255785
-
Gly
TCC
-
¡û
>A171002321
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
17336
17259
-
Gly
CCC
-
¡û
>A171002585
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1666613
1666536
-
Gly
TCC
-
¡û
>A171002686
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1082624
1082547
-
Gly
TCC
-
¡û
>A171003257
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
153938
154015
+
Gly
TCC
-
¡û
>A171003289
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1151390
1151313
-
Gly
CCC
-
¡û
>A171003325
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1324790
1324713
-
Gly
TCC
-
¡û
>A171003353
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
922824
922901
+
Gly
CCC
-
¡û
>A171003357
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1417480
1417557
+
Gly
TCC
-
¡û
>A171003761
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
20839
20916
+
Gly
CCC
-
¡û
>A171003777
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
958419
958496
+
Gly
TCC
-
¡û
>A171003900
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
523280
523203
-
Gly
TCC
-
¡û
>A171003906
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
421216
421139
-
Gly
CCC
-
¡û
>A171004045
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1239967
1240044
+
Gly
TCC
-
¡û
>A171004055
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1827927
1827850
-
Gly
CCC
-
¡û
>A171004243
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
328131
328054
-
Gly
TCC
-
¡û
>A171004280
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1371577
1371654
+
Gly
TCC
-
¡û
>A171006343
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
267736
267813
+
Gly
TCC
-
¡û
>A171006474
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1280724
1280801
+
Gly
TCC
-
¡û
>A171006609
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
756682
756605
-
Gly
TCC
-
¡û
>A171007111
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1460214
1460137
-
Gly
TCC
-
¡û
>At1799
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1180522
1180599
+
Gly
CCC
[Ensembl]
¡û
>At1805
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
149996
149919
-
Gly
TCC
[Ensembl]
¡û
>At1837
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1120311
1120388
+
Gly
CCC
[Ensembl]
¡û
>At1844
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
77737
77660
-
Gly
TCC
[Ensembl]
¡û
>At1939
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
2054865
2054942
+
Gly
TCC
[Ensembl]
¡û
>WENV170676728
LDZS01002043
[LDZS] terrestrial metagenome; oil reservoir sample K3
5392
5315
-
Gly
TCC
[ENA]
¢þ
>WENV170676732
LDZS01002058
[LDZS] terrestrial metagenome; oil reservoir sample K3
8949
9026
+
Gly
CCC
[ENA]
¢þ
>W1910200321
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
44308
44231
-
Gly
TCC
[ENA]
¡û
>W1910229999
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
35096
35173
+
Gly
TCC
[ENA]
¡û
>W1610000910
ABXN01000016
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
388754
388677
-
Gly
TCC
[ENA]
¡û
>W1610005584
AKID01000108
Euryarchaeota
Thermococcus sp. PK [AKID]
7521
7444
-
Gly
TCC
[ENA]
¡û
>W1610045159
BBBE01000002
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
34308
34385
+
Gly
TCC
[ENA]
¡û
>W1610638250
LIXN01000023
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
2102
2179
+
Gly
TCC
[ENA]
¡û
>W1610717937
LLYW01000031
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
972
895
-
Gly
TCC
[ENA]
¡û
>W1610717943
LLYW01000044
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
488
565
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK