This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127183 (20 seq.)
>A171000685
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
371071
371148
+
Pro
TGG
-
¡û
>A171001860
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
195447
195524
+
Pro
TGG
-
¡û
>A171003767
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
462461
462538
+
Pro
TGG
-
¡û
>A171003903
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
480851
480774
-
Pro
TGG
-
¡û
>A171004031
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
304430
304507
+
Pro
TGG
-
¡û
>A171006346
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
282314
282391
+
Pro
TGG
-
¡û
>A171006460
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
228598
228675
+
Pro
TGG
-
¡û
>A171006600
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1485964
1485887
-
Pro
TGG
-
¡û
>WENV170675987
LDZQ01001625
[LDZQ] terrestrial metagenome; oil reservoir sample I2
4196
4119
-
Pro
TGG
[ENA]
¢þ
>WENV170676313
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
101
178
+
Pro
TGG
[ENA]
¢þ
>WENV170676720
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
8995
9072
+
Pro
TGG
[ENA]
¢þ
>W1910200324
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
28558
28481
-
Pro
TGG
[ENA]
¡û
>W1910597276
LANF01000010
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
15575
15498
-
Pro
TGG
[ENA]
¡û
>W1610000699
ABSF01000002
Euryarchaeota
Thermococcus barophilus MP [ABSF]
42732
42809
+
Pro
TGG
[ENA]
¡û
>W1610004925
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
22068
21991
-
Pro
TGG
[ENA]
¡û
>W1610005563
AKID01000006
Euryarchaeota
Thermococcus sp. PK [AKID]
19653
19576
-
Pro
TGG
[ENA]
¡û
>W1610548878
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
125732
125655
-
Pro
TGG
[ENA]
¡û
>W1610612449
LGET01000084
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
4196
4119
-
Pro
TGG
[ENA]
¡û
>W1610612818
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
101
178
+
Pro
TGG
[ENA]
¡û
>W1610613032
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
8995
9072
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK