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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127185 (98 seq.)
>A171004355
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3640584
3640658
+
Met
CAT
-
¡û
>A171004650
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
970880
970806
-
Met
CAT
-
¡û
>A171004702
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
894858
894784
-
Met
CAT
-
¡û
>A171004784
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4085039
4085113
+
Met
CAT
-
¡û
>A171004837
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4017237
4017311
+
Met
CAT
-
¡û
>A171004893
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4472809
4472883
+
Met
CAT
-
¡û
>A171004970
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
729116
729042
-
Met
CAT
-
¡û
>A171005022
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
701006
700932
-
Met
CAT
-
¡û
>A171005074
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
727358
727284
-
Met
CAT
-
¡û
>A171005126
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
704997
704923
-
Met
CAT
-
¡û
>A171005179
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
732829
732755
-
Met
CAT
-
¡û
>A171005231
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
760386
760312
-
Met
CAT
-
¡û
>A171005285
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
839398
839324
-
Met
CAT
-
¡û
>A171005324
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3560032
3559958
-
Met
CAT
-
¡û
>A171005438
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1186565
1186491
-
Met
CAT
-
¡û
>A171005495
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1165865
1165791
-
Met
CAT
-
¡û
>A171005510
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
990060
990134
+
Met
CAT
-
¡û
>A171005576
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3650400
3650474
+
Met
CAT
-
¡û
>A171005625
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3568353
3568427
+
Met
CAT
-
¡û
>WENV180345788
OBLN01005538
[OBLN] sediment metagenome; sediment
1813
1887
+
Met
CAT
[ENA]
¢þ
>WENV170004507
AGTN01703209
[AGTN] bioreactor metagenome; poplar biomass
108
182
+
Met
CAT
[ENA]
¢þ
>WENV170723358
LSQX01265832
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3514
3440
-
Met
CAT
[ENA]
¢þ
>At1396
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4781878
4781952
+
Met
CAT
[Ensembl]
¡û
>At1471
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
200979
200905
-
Met
CAT
[Ensembl]
¡û
>At1507
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
856272
856346
+
Met
CAT
[Ensembl]
¡û
>WENV170784252
MCHG01000235
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
10015
9941
-
Met
CAT
[ENA]
¢þ
>W1910230880
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
74494
74568
+
Met
CAT
[ENA]
¡û
>W1910569231
JJOR01000048
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
136
210
+
Met
CAT
[ENA]
¡û
>W1910569320
JJOS01000117
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
9740
9814
+
Met
CAT
[ENA]
¡û
>W1910569367
JJOT01000098
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
9778
9852
+
Met
CAT
[ENA]
¡û
>W1910569391
JJOU01000073
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
5097
5023
-
Met
CAT
[ENA]
¡û
>W1910569454
JJOV01000066
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
10094
10168
+
Met
CAT
[ENA]
¡û
>W1910569489
JJOW01000099
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
4085
4159
+
Met
CAT
[ENA]
¡û
>W1910569566
JJOX01000079
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
269911
269837
-
Met
CAT
[ENA]
¡û
>W1910569619
JJOY01000049
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
270135
270061
-
Met
CAT
[ENA]
¡û
>W1910569632
JJOZ01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
160361
160287
-
Met
CAT
[ENA]
¡û
>W1910569696
JJPA01000072
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
7134
7208
+
Met
CAT
[ENA]
¡û
>W1910569734
JJPB01000001
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
5059
4985
-
Met
CAT
[ENA]
¡û
>W1910569814
JJPC01000068
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
7134
7208
+
Met
CAT
[ENA]
¡û
>W1910569839
JJPD01000013
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
5097
5023
-
Met
CAT
[ENA]
¡û
>W1910569899
JJPE01000030
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
28283
28357
+
Met
CAT
[ENA]
¡û
>W1910569965
JJPF01000066
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
5097
5023
-
Met
CAT
[ENA]
¡û
>W1910570005
JJPG01000049
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
9745
9819
+
Met
CAT
[ENA]
¡û
>W1910570073
JJPH01000093
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
5059
4985
-
Met
CAT
[ENA]
¡û
>W1910570112
JJPI01000061
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
9738
9812
+
Met
CAT
[ENA]
¡û
>W1910570153
JJPJ01000038
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
9777
9851
+
Met
CAT
[ENA]
¡û
>W1910570218
JJPK01000059
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
9740
9814
+
Met
CAT
[ENA]
¡û
>W1910570269
JJPL01000111
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
7134
7208
+
Met
CAT
[ENA]
¡û
>W1910570298
JJPM01000010
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
7135
7209
+
Met
CAT
[ENA]
¡û
>W1910570370
JJPN01000093
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
5097
5023
-
Met
CAT
[ENA]
¡û
>W1910570440
JJPO01000145
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
11135
11209
+
Met
CAT
[ENA]
¡û
>W1910570491
JJPP01000140
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
9723
9797
+
Met
CAT
[ENA]
¡û
>W1910570525
JJPQ01000101
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
5059
4985
-
Met
CAT
[ENA]
¡û
>W1910570557
JJPR01000029
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
54004
53930
-
Met
CAT
[ENA]
¡û
>W1910570620
JJPS01000110
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
1733
1807
+
Met
CAT
[ENA]
¡û
>W1910570659
JJPT01000031
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
9715
9789
+
Met
CAT
[ENA]
¡û
>W1910570730
JJPU01000140
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
33313
33387
+
Met
CAT
[ENA]
¡û
>W1910570749
JJPV01000001
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
31921
31847
-
Met
CAT
[ENA]
¡û
>W1910570848
JJPW01000128
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
9776
9850
+
Met
CAT
[ENA]
¡û
>W1910570887
JJPX01000142
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
54072
53998
-
Met
CAT
[ENA]
¡û
>W1910570935
JJPY01000090
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
9754
9828
+
Met
CAT
[ENA]
¡û
>W1910570962
JJPZ01000027
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
5097
5023
-
Met
CAT
[ENA]
¡û
>W1910571048
JJQA01000122
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
73758
73684
-
Met
CAT
[ENA]
¡û
>W1910571090
JJQB01000117
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
54855
54781
-
Met
CAT
[ENA]
¡û
>W1910571118
JJQC01000070
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
32196
32270
+
Met
CAT
[ENA]
¡û
>W1910571174
JJQD01000084
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
7132
7206
+
Met
CAT
[ENA]
¡û
>W1910571251
JJQE01000163
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
28272
28346
+
Met
CAT
[ENA]
¡û
>W1910571301
JJQF01000140
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
53919
53845
-
Met
CAT
[ENA]
¡û
>W1910571336
JJQG01000118
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571365
JJQH01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571455
JJQI01000119
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
54182
54108
-
Met
CAT
[ENA]
¡û
>W1910571458
JJQJ01000012
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571564
JJQK01000292
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
9688
9762
+
Met
CAT
[ENA]
¡û
>W1910571604
JJQL01000080
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
16332
16406
+
Met
CAT
[ENA]
¡û
>W1910571669
JJQM01000152
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571702
JJQN01000077
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
9769
9843
+
Met
CAT
[ENA]
¡û
>W1910571773
JJQO01000297
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571803
JJQP01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
234
308
+
Met
CAT
[ENA]
¡û
>W1910571876
JJQQ01000092
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
31922
31848
-
Met
CAT
[ENA]
¡û
>W1910571939
JJQR01000134
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
160
234
+
Met
CAT
[ENA]
¡û
>W1910571970
JJQS01000051
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
31890
31816
-
Met
CAT
[ENA]
¡û
>W1910572044
JJQT01000225
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
132
206
+
Met
CAT
[ENA]
¡û
>W1910572077
JJQU01000118
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
9778
9852
+
Met
CAT
[ENA]
¡û
>W1910572128
JJQV01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
160
234
+
Met
CAT
[ENA]
¡û
>W1910572195
JJQW01000136
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
9960
10034
+
Met
CAT
[ENA]
¡û
>W1910572203
JJQX01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
129
203
+
Met
CAT
[ENA]
¡û
>W1910572246
JJQY01000010
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
184
258
+
Met
CAT
[ENA]
¡û
>W1910572302
JJQZ01000049
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
28365
28439
+
Met
CAT
[ENA]
¡û
>W1910572356
JJRA01000035
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
160
234
+
Met
CAT
[ENA]
¡û
>W1910572442
JJRB01000141
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
9930
10004
+
Met
CAT
[ENA]
¡û
>W1910575032
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
167514
167588
+
Met
CAT
[ENA]
¡û
>W1910635280
LMVP01000533
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
10253
10327
+
Met
CAT
[ENA]
¡û
>W1910655386
LZPK01000121
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3118
3192
+
Met
CAT
[ENA]
¡û
>W1910694794
MDTP02000087
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
10015
9941
-
Met
CAT
[ENA]
¡û
>W1610000041
AAAR03000017
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
57980
57906
-
Met
CAT
[ENA]
¡û
>W1610045111
BBBC01000052
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
17244
17170
-
Met
CAT
[ENA]
¡û
>W1610046883
BBCW01000009
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
30570
30644
+
Met
CAT
[ENA]
¡û
>W1610048610
BBEF01000051
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
10504
10578
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK