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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127187 (106 seq.)
>A171003586
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1816706
1816780
+
Pro
CGG
-
¡û
>A171004368
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2755474
2755400
-
Pro
CGG
-
¡û
>A171004636
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2816781
2816707
-
Pro
CGG
-
¡û
>A171004678
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3342018
3342092
+
Pro
CGG
-
¡û
>A171004770
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
610638
610712
+
Pro
CGG
-
¡û
>A171004823
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
587926
588000
+
Pro
CGG
-
¡û
>A171004876
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
621374
621448
+
Pro
CGG
-
¡û
>A171004951
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3567646
3567572
-
Pro
CGG
-
¡û
>A171005001
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3533026
3532952
-
Pro
CGG
-
¡û
>A171005053
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3622631
3622557
-
Pro
CGG
-
¡û
>A171005095
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2772073
2772147
+
Pro
CGG
-
¡û
>A171005144
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1853163
1853237
+
Pro
CGG
-
¡û
>A171005191
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
420131
420206
+
Pro
CGG
-
¡û
>A171005262
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4452179
4452104
-
Pro
CGG
-
¡û
>A171005335
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2744691
2744617
-
Pro
CGG
-
¡û
>A171005445
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
642959
642885
-
Pro
CGG
-
¡û
>A171005502
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
619665
619591
-
Pro
CGG
-
¡û
>A171005524
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4308961
4309035
+
Pro
CGG
-
¡û
>A171005560
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
593674
593748
+
Pro
CGG
-
¡û
>A171005645
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2499042
2498968
-
Pro
CGG
-
¡û
>A178000291
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
871069
871165
+
Pro
CGG
-
¡û
>WENV180311227
OBJT01176433
[OBJT] soil metagenome; soil
127
201
+
Pro
CGG
[ENA]
¢þ
>WENV180345652
OBLN01001813
[OBLN] sediment metagenome; sediment
5540
5614
+
Pro
CGG
[ENA]
¢þ
>WENV181312172
OFJB01051888
[OFJB] sludge metagenome; sludge
475
400
-
Pro
CGG
[ENA]
¢þ
>At1373
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
702737
702811
+
Pro
CGG
[Ensembl]
¡û
>At1483
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1756181
1756107
-
Pro
CGG
[Ensembl]
¡û
>At1515
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2099629
2099703
+
Pro
CGG
[Ensembl]
¡û
>WENV170644592
JMBW01036761
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
114
40
-
Pro
CGG
[ENA]
¢þ
>WENV170669247
LAHR01061781
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
652
578
-
Pro
CGG
[ENA]
¢þ
>WENV170717474
LSQX01036433
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1795
1869
+
Pro
CGG
[ENA]
¢þ
>WENV170727048
LSQX01402792
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
240
166
-
Pro
CGG
[ENA]
¢þ
>WENV170784225
MCHG01000166
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
16282
16208
-
Pro
CGG
[ENA]
¢þ
>W1910230886
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
319492
319418
-
Pro
CGG
[ENA]
¡û
>W1910569271
JJOR01000188
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
26090
26164
+
Pro
CGG
[ENA]
¡û
>W1910569311
JJOS01000090
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
11311
11237
-
Pro
CGG
[ENA]
¡û
>W1910569345
JJOT01000028
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
55003
55077
+
Pro
CGG
[ENA]
¡û
>W1910569408
JJOU01000144
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
24528
24602
+
Pro
CGG
[ENA]
¡û
>W1910569443
JJOV01000041
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
50165
50240
+
Pro
CGG
[ENA]
¡û
>W1910569505
JJOW01000188
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
18709
18784
+
Pro
CGG
[ENA]
¡û
>W1910569553
JJOX01000073
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
74992
74917
-
Pro
CGG
[ENA]
¡û
>W1910569593
JJOY01000014
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
74994
74919
-
Pro
CGG
[ENA]
¡û
>W1910569637
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
270673
270748
+
Pro
CGG
[ENA]
¡û
>W1910569687
JJPA01000028
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
11128
11054
-
Pro
CGG
[ENA]
¡û
>W1910569747
JJPB01000074
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
24522
24596
+
Pro
CGG
[ENA]
¡û
>W1910569810
JJPC01000055
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
39343
39417
+
Pro
CGG
[ENA]
¡û
>W1910569844
JJPD01000032
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
11449
11523
+
Pro
CGG
[ENA]
¡û
>W1910569912
JJPE01000085
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910569960
JJPF01000058
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910569989
JJPG01000001
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
24523
24597
+
Pro
CGG
[ENA]
¡û
>W1910570070
JJPH01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
24531
24605
+
Pro
CGG
[ENA]
¡û
>W1910570126
JJPI01000088
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
152988
153062
+
Pro
CGG
[ENA]
¡û
>W1910570174
JJPJ01000062
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
11312
11238
-
Pro
CGG
[ENA]
¡û
>W1910570201
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
276309
276235
-
Pro
CGG
[ENA]
¡û
>W1910570246
JJPL01000017
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
11270
11196
-
Pro
CGG
[ENA]
¡û
>W1910570304
JJPM01000056
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
3070
3144
+
Pro
CGG
[ENA]
¡û
>W1910570347
JJPN01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
24526
24600
+
Pro
CGG
[ENA]
¡û
>W1910570436
JJPO01000141
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
54824
54898
+
Pro
CGG
[ENA]
¡û
>W1910570480
JJPP01000126
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
55003
55077
+
Pro
CGG
[ENA]
¡û
>W1910570510
JJPQ01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
24525
24599
+
Pro
CGG
[ENA]
¡û
>W1910570594
JJPR01000143
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910570603
JJPS01000029
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910570664
JJPT01000043
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
135323
135397
+
Pro
CGG
[ENA]
¡û
>W1910570710
JJPU01000066
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
26934
27008
+
Pro
CGG
[ENA]
¡û
>W1910570751
JJPV01000002
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
55061
55135
+
Pro
CGG
[ENA]
¡û
>W1910570812
JJPW01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
79146
79220
+
Pro
CGG
[ENA]
¡û
>W1910570882
JJPX01000104
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910570938
JJPY01000097
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
24525
24599
+
Pro
CGG
[ENA]
¡û
>W1910570964
JJPZ01000029
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
11195
11121
-
Pro
CGG
[ENA]
¡û
>W1910571023
JJQA01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
242599
242673
+
Pro
CGG
[ENA]
¡û
>W1910571083
JJQB01000100
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
19369
19443
+
Pro
CGG
[ENA]
¡û
>W1910571105
JJQC01000008
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
24430
24504
+
Pro
CGG
[ENA]
¡û
>W1910571201
JJQD01000219
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
54409
54483
+
Pro
CGG
[ENA]
¡û
>W1910571202
JJQE01000010
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
24527
24601
+
Pro
CGG
[ENA]
¡û
>W1910571253
JJQF01000005
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
11120
11046
-
Pro
CGG
[ENA]
¡û
>W1910571346
JJQG01000146
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
11341
11267
-
Pro
CGG
[ENA]
¡û
>W1910571389
JJQH01000156
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
26090
26164
+
Pro
CGG
[ENA]
¡û
>W1910571442
JJQI01000091
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
19396
19470
+
Pro
CGG
[ENA]
¡û
>W1910571496
JJQJ01000162
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
26550
26624
+
Pro
CGG
[ENA]
¡û
>W1910571528
JJQK01000084
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
6033
5959
-
Pro
CGG
[ENA]
¡û
>W1910571586
JJQL01000041
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
17678
17603
-
Pro
CGG
[ENA]
¡û
>W1910571617
JJQM01000013
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
24535
24609
+
Pro
CGG
[ENA]
¡û
>W1910571724
JJQN01000161
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
68285
68359
+
Pro
CGG
[ENA]
¡û
>W1910571762
JJQO01000101
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
24530
24604
+
Pro
CGG
[ENA]
¡û
>W1910571820
JJQP01000158
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
11298
11224
-
Pro
CGG
[ENA]
¡û
>W1910571898
JJQQ01000173
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
26454
26528
+
Pro
CGG
[ENA]
¡û
>W1910571941
JJQR01000135
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
24532
24606
+
Pro
CGG
[ENA]
¡û
>W1910571996
JJQS01000118
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
11341
11267
-
Pro
CGG
[ENA]
¡û
>W1910572029
JJQT01000142
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
56235
56309
+
Pro
CGG
[ENA]
¡û
>W1910572065
JJQU01000078
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
11343
11269
-
Pro
CGG
[ENA]
¡û
>W1910572125
JJQV01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
11341
11267
-
Pro
CGG
[ENA]
¡û
>W1910572168
JJQW01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
24534
24608
+
Pro
CGG
[ENA]
¡û
>W1910572235
JJQX01000207
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
3004
3078
+
Pro
CGG
[ENA]
¡û
>W1910572271
JJQY01000095
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
67509
67584
+
Pro
CGG
[ENA]
¡û
>W1910572297
JJQZ01000016
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
11255
11181
-
Pro
CGG
[ENA]
¡û
>W1910572383
JJRA01000104
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
11316
11242
-
Pro
CGG
[ENA]
¡û
>W1910572395
JJRB01000002
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
24536
24610
+
Pro
CGG
[ENA]
¡û
>W1910575040
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1416397
1416471
+
Pro
CGG
[ENA]
¡û
>W1910635243
LMVP01000101
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
28851
28777
-
Pro
CGG
[ENA]
¡û
>W1910655378
LZPK01000055
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
26356
26282
-
Pro
CGG
[ENA]
¡û
>W1910694765
MDTP02000005
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
59127
59053
-
Pro
CGG
[ENA]
¡û
>W1610000016
AAAR03000002
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
11368
11294
-
Pseudo
CGG
[ENA]
¡û
>W1610045092
BBBC01000003
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
11295
11221
-
Pseudo
CGG
[ENA]
¡û
>W1610046889
BBCW01000019
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
12990
13065
+
Pseudo
CGG
[ENA]
¡û
>W1610048601
BBEF01000025
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
11184
11258
+
Pseudo
CGG
[ENA]
¡û
>W1610605082
LFRP01000003
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
59211
59137
-
Pseudo
CGG
[ENA]
¡û
>W1610670239
LKAZ01000028
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
30641
30715
+
Pseudo
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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