This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127215 (114 seq.)
>W1711115560
LUAH01000016
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
33287
33210
-
Val
TAC
[ENA]
¡û
>W1711354778
MDFN01000008
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
66001
65924
-
Val
TAC
[ENA]
¡û
>W1711354779
MDFN01000008
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
44436
44359
-
Val
TAC
[ENA]
¡û
>W1711506299
MKWH01000021
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
227824
227747
-
Val
TAC
[ENA]
¡û
>W1711506301
MKWH01000021
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
227650
227573
-
Val
TAC
[ENA]
¡û
>W1711712767
MTCM01000003
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
218352
218275
-
Val
TAC
[ENA]
¡û
>W1711712769
MTCM01000003
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
218178
218101
-
Val
TAC
[ENA]
¡û
>C171089522
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
6250881
6250804
-
Val
TAC
-
¡û
>C171118465
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5953950
5953873
-
Val
TAC
-
¡û
>C171118467
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5953775
5953698
-
Val
TAC
-
¡û
>W131156285
AQPN01000145
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
127433
127358
-
Val
TAC
[ENA]
¡û
>W131156286
AQPN01000145
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
109743
109666
-
Val
TAC
[ENA]
¡û
>WENV183726748
PJTO01000120
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
70321
70244
-
Val
TAC
[ENA]
¢þ
>WENV183726750
PJTO01000120
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183727676
PJTP01000082
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
70321
70244
-
Val
TAC
[ENA]
¢þ
>WENV183727678
PJTP01000082
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183728624
PJTQ01000197
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183728779
PJTQ01000430
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
23542
23619
+
Val
TAC
[ENA]
¢þ
>WENV183728781
PJTQ01000430
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
23717
23792
+
Val
TAC
[ENA]
¢þ
>WENV183729861
PJTR01000135
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
93161
93236
+
Val
TAC
[ENA]
¢þ
>WENV183730224
PJTR01005863
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
156
79
-
Val
TAC
[ENA]
¢þ
>WENV183730596
PJTS01000169
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13473
13550
+
Val
TAC
[ENA]
¢þ
>WENV183730598
PJTS01000169
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13647
13722
+
Val
TAC
[ENA]
¢þ
>WENV183731800
PJTT01000191
[PJTT] soil metagenome; Soil (2) enriched on wood chips
93161
93236
+
Val
TAC
[ENA]
¢þ
>WENV183732306
PJTX01000006
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
165565
165488
-
Val
TAC
[ENA]
¢þ
>WENV183732308
PJTX01000006
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
165391
165316
-
Val
TAC
[ENA]
¢þ
>WENV183733014
PJTY01000019
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
233211
233134
-
Val
TAC
[ENA]
¢þ
>WENV183733016
PJTY01000019
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
233037
232962
-
Val
TAC
[ENA]
¢þ
>WENV183734025
PJTZ01000022
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
233083
233006
-
Val
TAC
[ENA]
¢þ
>WENV183734027
PJTZ01000022
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
232909
232834
-
Val
TAC
[ENA]
¢þ
>WENV183735116
PJUA01001100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
92
169
+
Val
TAC
[ENA]
¢þ
>WENV183735118
PJUA01001100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
267
342
+
Val
TAC
[ENA]
¢þ
>WENV183735236
PJUA01004809
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183735651
PJUB01000321
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23542
23619
+
Val
TAC
[ENA]
¢þ
>WENV183735653
PJUB01000321
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23717
23792
+
Val
TAC
[ENA]
¢þ
>WENV183735719
PJUB01000863
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
6535
6460
-
Val
TAC
[ENA]
¢þ
>WENV183735815
PJUB01003704
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
2121
2046
-
Val
TAC
[ENA]
¢þ
>WENV183736151
PJUC01000053
[PJUC] soil metagenome; Soil enriched on filter paper
37125
37048
-
Val
TAC
[ENA]
¢þ
>WENV183736152
PJUC01000053
[PJUC] soil metagenome; Soil enriched on filter paper
37003
36928
-
Val
TAC
[ENA]
¢þ
>WENV183736837
PJUD01000053
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
9842
9919
+
Val
TAC
[ENA]
¢þ
>WENV183736838
PJUD01000053
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
9934
10009
+
Val
TAC
[ENA]
¢þ
>WENV183736865
PJUD01000066
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
126088
126165
+
Val
TAC
[ENA]
¢þ
>WENV183736867
PJUD01000066
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
126262
126337
+
Val
TAC
[ENA]
¢þ
>WENV183737031
PJUD01000259
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183737056
PJUD01000316
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30548
30625
+
Val
TAC
[ENA]
¢þ
>WENV183737058
PJUD01000316
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30722
30797
+
Val
TAC
[ENA]
¢þ
>WENV183737311
PJUD01003422
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183737312
PJUD01003422
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4596
4671
+
Val
TAC
[ENA]
¢þ
>WENV183738631
PJUE01000053
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
9842
9919
+
Val
TAC
[ENA]
¢þ
>WENV183738632
PJUE01000053
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
9934
10009
+
Val
TAC
[ENA]
¢þ
>WENV183738691
PJUE01000108
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
111740
111817
+
Val
TAC
[ENA]
¢þ
>WENV183738877
PJUE01000333
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
110
185
+
Val
TAC
[ENA]
¢þ
>WENV183738898
PJUE01000379
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183738901
PJUE01000393
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30548
30625
+
Val
TAC
[ENA]
¢þ
>WENV183738903
PJUE01000393
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30722
30797
+
Val
TAC
[ENA]
¢þ
>WENV183739156
PJUE01002398
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183739157
PJUE01002398
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4596
4671
+
Val
TAC
[ENA]
¢þ
>WENV183740105
PJUF01000347
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
27283
27360
+
Val
TAC
[ENA]
¢þ
>WENV183740106
PJUF01000347
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
27404
27479
+
Val
TAC
[ENA]
¢þ
>WENV183740404
PJUF01001697
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10269
10346
+
Val
TAC
[ENA]
¢þ
>WENV183740405
PJUF01001697
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10372
10447
+
Val
TAC
[ENA]
¢þ
>WENV183740573
PJUF01003605
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4806
4883
+
Val
TAC
[ENA]
¢þ
>WENV183740575
PJUF01003605
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4980
5055
+
Val
TAC
[ENA]
¢þ
>WENV183740992
PJUF01024944
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
949
874
-
Val
TAC
[ENA]
¢þ
>WENV183741404
PJUG01000005
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
371485
371408
-
Val
TAC
[ENA]
¢þ
>WENV183741406
PJUG01000005
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
371311
371236
-
Val
TAC
[ENA]
¢þ
>WENV183741919
PJUH01000008
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183741921
PJUH01000008
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183742552
PJUI01000013
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
265723
265800
+
Val
TAC
[ENA]
¢þ
>WENV183742554
PJUI01000013
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
265897
265972
+
Val
TAC
[ENA]
¢þ
>WENV183743014
PJUJ01000008
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183743016
PJUJ01000008
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183743256
PJUJ01000259
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17967
17890
-
Val
TAC
[ENA]
¢þ
>WENV183743258
PJUJ01000259
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17792
17717
-
Val
TAC
[ENA]
¢þ
>WENV183743824
PJUK01000007
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183743826
PJUK01000007
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183745364
PJUL01038126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
48
125
+
Val
TAC
[ENA]
¢þ
>WENV183745366
PJUL01038126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
222
297
+
Val
TAC
[ENA]
¢þ
>W09123555
ACHA01000011
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
74087
74164
+
Val
TAC
[ENA]
¡û
>C181226004
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
413217
413142
-
Val
TAC
-
¡û
>C191157507
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
157060
157135
+
Val
TAC
-
¡û
>C191158017
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
312848
312925
+
Val
TAC
-
¡û
>C191158018
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
312970
313045
+
Val
TAC
-
¡û
>C191221529
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
336535
336610
+
Val
TAC
-
¡û
>C191222285
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2151620
2151697
+
Val
TAC
-
¡û
>C191222287
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2151794
2151869
+
Val
TAC
-
¡û
>W141701939
JMLD01000003
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
111606
111683
+
Val
TAC
[ENA]
¡û
>W141701941
JMLD01000003
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
111780
111855
+
Val
TAC
[ENA]
¡û
>W1910664385
MCAQ01000025
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
267424
267347
-
Val
TAC
[ENA]
¡û
>W1910664387
MCAQ01000025
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
267249
267174
-
Val
TAC
[ENA]
¡û
>W1911136228
NOUX01000006
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
248815
248738
-
Val
TAC
[ENA]
¡û
>W1911136263
NOUY01000007
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
168528
168451
-
Val
TAC
[ENA]
¡û
>W1810002555
BEYR01000002
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
314463
314540
+
Val
TAC
[ENA]
¡û
>W1810002557
BEYR01000002
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
314637
314712
+
Val
TAC
[ENA]
¡û
>W1810069034
PEAZ01000059
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
7200
7123
-
Val
TAC
[ENA]
¡û
>W1810069035
PEAZ01000059
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
7078
7003
-
Val
TAC
[ENA]
¡û
>W1810069108
PEBA01000065
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
449
374
-
Val
TAC
[ENA]
¡û
>W1810564221
QEAS01000020
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
69166
69243
+
Val
TAC
[ENA]
¡û
>W1810564222
QEAS01000020
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
69297
69374
+
Val
TAC
[ENA]
¡û
>W1511108318
JJMU01000026
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
90610
90687
+
Val
TAC
[ENA]
¡û
>C11117925
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2968608
2968531
-
Val
TAC
[Ensembl]
¡û
>C11117926
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2968513
2968438
-
Val
TAC
[Ensembl]
¡û
>C11121246
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
37422
37345
-
Val
TAC
[Ensembl]
¡û
>C11121247
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
37292
37217
-
Val
TAC
[Ensembl]
¡û
>W11140079
AEKX01000011
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
136462
136385
-
Val
TAC
[ENA]
¡û
>W11140080
AEKX01000011
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
136367
136292
-
Val
TAC
[ENA]
¡û
>W1511590261
LBGU01000028
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13735
13658
-
Val
TAC
[ENA]
¡û
>W1511590263
LBGU01000028
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13561
13484
-
Val
TAC
[ENA]
¡û
>C161040190
CP012155
Bacteroidota
Bacteroidetes bacterium UKL13-3 [CP012155]
1922836
1922759
-
Val
TAC
-
¡û
>W1710521477
FNGK01000016
Bacteroidota
Sphingobacterium mizutaii [FNGK]
676
599
-
Val
TAC
[ENA]
¡û
>W1710538674
FNUT01000001
Bacteroidota
Sphingobacterium lactis [FNUT]
365615
365540
-
Val
TAC
[ENA]
¡û
>W1710543714
FOAF01000017
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
40980
40903
-
Val
TAC
[ENA]
¡û
>W1710543716
FOAF01000019
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
34079
34002
-
Val
TAC
[ENA]
¡û
>W1710608365
FXAU01000007
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
125375
125450
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK