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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127376 (42 seq.)
>W131001757
AGYK01000019
Bacillota
Clostridium butyricum 60E.3 [AGYK]
44739
44823
+
Leu
TAG
[ENA]
¡û
>W131110793
APKZ01000044
Bacillota
Clostridium butyricum DKU-01 [APKZ]
8700
8616
-
Leu
TAG
[ENA]
¡û
>C171021793
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
81114
81030
-
Leu
TAG
-
¡û
>C171047538
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
329813
329897
+
Leu
TAG
-
¡û
>WENV180278638
OBHX01006423
[OBHX] metagenome; feces
1627
1711
+
Leu
TAG
[ENA]
¢þ
>WENV180333795
OBLF01002117
[OBLF] metagenome; feces
14063
13979
-
Leu
TAG
[ENA]
¢þ
>WENV180347670
OBLO01000891
[OBLO] metagenome; feces
23097
23013
-
Leu
TAG
[ENA]
¢þ
>W08001345
ABDT01000094
Bacillota
Clostridium butyricum 5521 [ABDT]
134463
134547
+
Leu
TAG
[ENA]
¡û
>WENV181555108
OGIT01000023
[OGIT] metagenome; Human gut stool
82783
82867
+
Leu
TAG
[ENA]
¢þ
>WENV181798333
OGRV01000031
[OGRV] human gut metagenome; fecal sample 3 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181798908
OGRX01001392
[OGRX] human gut metagenome; fecal sample 2 from infant 8
400
484
+
Leu
TAG
[ENA]
¢þ
>WENV181801279
OGSB01000035
[OGSB] human gut metagenome; fecal sample 5 from infant 3
134283
134367
+
Leu
TAG
[ENA]
¢þ
>WENV181801840
OGSC01000160
[OGSC] human gut metagenome; fecal sample 8 from infant 5
399
483
+
Leu
TAG
[ENA]
¢þ
>WENV181805395
OGSI01000334
[OGSI] human gut metagenome; fecal sample 4 from infant 8
9064
9148
+
Leu
TAG
[ENA]
¢þ
>WENV181805656
OGSJ01000186
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
398
482
+
Leu
TAG
[ENA]
¢þ
>WENV181807785
OGSQ01000134
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
40926
40842
-
Leu
TAG
[ENA]
¢þ
>WENV181809349
OGST01000017
[OGST] human gut metagenome; fecal sample 7 from infant 6
117177
117261
+
Leu
TAG
[ENA]
¢þ
>WENV181810698
OGSV01001220
[OGSV] human gut metagenome; fecal sample 4 from infant 3
2525
2441
-
Leu
TAG
[ENA]
¢þ
>WENV181813717
OGTD01000275
[OGTD] human gut metagenome; fecal sample 1 from infant 3
7227
7311
+
Leu
TAG
[ENA]
¢þ
>WENV181814369
OGTG01000053
[OGTG] human gut metagenome; fecal sample 1 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181815044
OGTI01000174
[OGTI] human gut metagenome; fecal sample 5 from infant 1
4866
4950
+
Leu
TAG
[ENA]
¢þ
>WENV181817587
OGTN01001129
[OGTN] human gut metagenome; fecal sample 5 from infant 4
327
411
+
Leu
TAG
[ENA]
¢þ
>WENV181818223
OGTS01000037
[OGTS] human gut metagenome; fecal sample 4 from infant 4
30868
30952
+
Leu
TAG
[ENA]
¢þ
>WENV181818625
OGTT01000519
[OGTT] human gut metagenome; fecal sample 6 from infant 8
8954
9038
+
Leu
TAG
[ENA]
¢þ
>WENV181818868
OGTU01000057
[OGTU] human gut metagenome; fecal sample 6 from infant 4
68142
68058
-
Leu
TAG
[ENA]
¢þ
>WENV181822997
OGUH01002389
[OGUH] human gut metagenome; fecal sample 3 from infant 3
26
110
+
Leu
TAG
[ENA]
¢þ
>W141206231
AZLX01000021
Bacillota
Clostridium butyricum DORA_1 [AZLX]
73400
73316
-
Leu
TAG
[ENA]
¡û
>W141259005
CBYK010000006
Bacillota
Clostridium butyricum [CBYK]
105324
105240
-
Leu
TAG
[ENA]
¡û
>WENV182944825
OKVJ01002032
[OKVJ] human gut metagenome; human gut
4582
4666
+
Leu
TAG
[ENA]
¢þ
>C191171157
CP039702
Bacillota
Clostridium butyricum [CP039702]
388632
388716
+
Leu
TAG
-
¡û
>C191171282
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2140589
2140673
+
Leu
TAG
-
¡û
>W1910637981
LRDH01000104
Bacillota
Clostridium butyricum 300064 [LRDH]
58901
58817
-
Leu
TAG
[ENA]
¡û
>W1810250564
PQCS01000178
Bacillota
Clostridium sp. 3-3 [PQCS]
5260
5344
+
Leu
TAG
[ENA]
¡û
>W1810805936
QRUG01000006
Bacillota
Clostridium butyricum AF25-25 [QRUG]
80154
80070
-
Leu
TAG
[ENA]
¡û
>W1511350216
JRMA01000015
Bacillota
Clostridium butyricum INCQS635 [JRMA]
94188
94272
+
Leu
TAG
[ENA]
¡û
>W1511365604
JSEG01000021
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
82995
82911
-
Leu
TAG
[ENA]
¡û
>W1511554754
JZWE01000051
Bacillota
Clostridium sp. IBUN22A [JZWE]
8782
8698
-
Leu
TAG
[ENA]
¡û
>W1511554825
JZWF01000030
Bacillota
Clostridium sp. IBUN125C [JZWF]
125270
125354
+
Leu
TAG
[ENA]
¡û
>W1511554861
JZWG01000025
Bacillota
Clostridium sp. IBUN13A [JZWG]
84897
84813
-
Leu
TAG
[ENA]
¡û
>W1511554975
JZWH01000070
Bacillota
Clostridium sp. IBUN62F [JZWH]
125246
125330
+
Leu
TAG
[ENA]
¡û
>C161054123
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
640573
640657
+
Leu
TAG
-
¡û
>C161076400
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
313570
313654
+
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK