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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127382 (94 seq.)
>W1711713285
MTCY01000010
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
46735
46658
-
Val
TAC
[ENA]
¡û
>W1711713286
MTCY01000010
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
46626
46549
-
Val
TAC
[ENA]
¡û
>W1711713430
MTDA01000055
Bacteroidota
Flavobacterium covae columnare [MTDA]
186
111
-
Val
TAC
[ENA]
¡û
>W1711713481
MTDC01000229
Bacteroidota
Flavobacterium covae columnare [MTDC]
3193
3268
+
Val
TAC
[ENA]
¡û
>W1711713492
MTDD01000004
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
76642
76719
+
Val
TAC
[ENA]
¡û
>W1711713493
MTDD01000004
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
76751
76828
+
Val
TAC
[ENA]
¡û
>W1711737976
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521020
521095
+
Val
TAC
[ENA]
¡û
>W1711737977
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521128
521203
+
Val
TAC
[ENA]
¡û
>W1711737978
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521236
521311
+
Val
TAC
[ENA]
¡û
>W1711737979
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521344
521419
+
Val
TAC
[ENA]
¡û
>W1711737980
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521452
521527
+
Val
TAC
[ENA]
¡û
>W1711737981
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521560
521635
+
Val
TAC
[ENA]
¡û
>W1711737982
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521668
521745
+
Val
TAC
[ENA]
¡û
>C171086268
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2493113
2493038
-
Val
TAC
-
¡û
>C171086269
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2493005
2492930
-
Val
TAC
-
¡û
>C171086270
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492897
2492822
-
Val
TAC
-
¡û
>C171086271
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492789
2492714
-
Val
TAC
-
¡û
>C171086272
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492681
2492604
-
Val
TAC
-
¡û
>C171086273
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492573
2492498
-
Val
TAC
-
¡û
>C171086274
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492465
2492388
-
Val
TAC
-
¡û
>WENV182551107
OJCB01021825
[OJCB] seawater metagenome; Sea water
405
330
-
Val
TAC
[ENA]
¢þ
>WENV182574456
OJFR01027834
[OJFR] seawater metagenome; Sea water
163
238
+
Val
TAC
[ENA]
¢þ
>WENV182591934
OJIO01019813
[OJIO] seawater metagenome; Sea water
849
924
+
Val
TAC
[ENA]
¢þ
>WENV183056750
OLHJ01010629
[OLHJ] seawater metagenome; Sea water
1570
1495
-
Val
TAC
[ENA]
¢þ
>WENV183056755
OLHJ01011269
[OLHJ] seawater metagenome; Sea water
169
94
-
Val
TAC
[ENA]
¢þ
>WENV183062325
OLID01002948
[OLID] seawater metagenome; Sea water
383
308
-
Val
TAC
[ENA]
¢þ
>WENV183064738
OLII01000247
[OLII] seawater metagenome; Sea water
21448
21523
+
Val
TAC
[ENA]
¢þ
>WENV170537725
CEWR01025004
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8788
8711
-
Val
TAC
[ENA]
¢þ
>WENV170538647
CEWR01100860
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1382
1459
+
Val
TAC
[ENA]
¢þ
>WENV170781954
MAAC01005180
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
77
2
-
Val
TAC
[ENA]
¢þ
>WENV170783275
MAAC01015519
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
48413
48336
-
Val
TAC
[ENA]
¢þ
>WENV170783276
MAAC01015519
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
48299
48224
-
Val
TAC
[ENA]
¢þ
>WENV170783284
MAAC01015600
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2411
2488
+
Val
TAC
[ENA]
¢þ
>WENV170783285
MAAC01015600
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2523
2598
+
Val
TAC
[ENA]
¢þ
>WENV170783323
MAAC01015809
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170783422
MAAC01016761
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2519
2596
+
Val
TAC
[ENA]
¢þ
>C191008631
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
911002
910927
-
Val
TAC
-
¡û
>C191008632
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
910894
910819
-
Val
TAC
-
¡û
>C191008633
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
910786
910711
-
Val
TAC
-
¡û
>C191008634
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
910678
910603
-
Val
TAC
-
¡û
>C191008635
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
910570
910495
-
Val
TAC
-
¡û
>C191008636
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
910462
910387
-
Val
TAC
-
¡û
>C141012315
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1556380
1556457
+
Val
TAC
-
¡û
>C141012347
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
834430
834353
-
Val
TAC
-
¡û
>W1910804172
MTCX01000057
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
3986
4061
+
Val
TAC
[ENA]
¡û
>W1910804173
MTCX01000057
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
4095
4170
+
Val
TAC
[ENA]
¡û
>W1910804238
MTDB01000057
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
667
592
-
Val
TAC
[ENA]
¡û
>W1910804239
MTDB01000057
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
553
478
-
Val
TAC
[ENA]
¡û
>W1910804240
MTDB01000057
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
439
364
-
Val
TAC
[ENA]
¡û
>W1910809011
MUGU01000091
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
26
101
+
Val
TAC
[ENA]
¡û
>W1910809012
MUGU01000091
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
140
215
+
Val
TAC
[ENA]
¡û
>W1910809013
MUGU01000091
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
255
330
+
Val
TAC
[ENA]
¡û
>W1911533981
OLKH01000067
Bacteroidota
Flavobacterium columnare [OLKH]
20274
20199
-
Val
TAC
[ENA]
¡û
>W1911533982
OLKH01000067
Bacteroidota
Flavobacterium columnare [OLKH]
20166
20091
-
Val
TAC
[ENA]
¡û
>W1911564326
PCMX01000060
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
10344
10269
-
Val
TAC
[ENA]
¡û
>W1810355152
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292153
2292228
+
Val
TAC
[ENA]
¡û
>W1810355153
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292261
2292336
+
Val
TAC
[ENA]
¡û
>W1810355154
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292369
2292444
+
Val
TAC
[ENA]
¡û
>W1810355155
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292477
2292552
+
Val
TAC
[ENA]
¡û
>W1810355156
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292585
2292660
+
Val
TAC
[ENA]
¡û
>W1810355157
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2292693
2292768
+
Val
TAC
[ENA]
¡û
>C121009137
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544792
544717
-
Val
TAC
[Ensembl]
¡û
>C121009138
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544684
544609
-
Val
TAC
[Ensembl]
¡û
>C121009139
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544576
544501
-
Val
TAC
[Ensembl]
¡û
>C121009140
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544468
544393
-
Val
TAC
[Ensembl]
¡û
>C121009141
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544360
544285
-
Val
TAC
[Ensembl]
¡û
>C121009142
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544252
544177
-
Val
TAC
[Ensembl]
¡û
>C121009143
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
544144
544067
-
Val
TAC
[Ensembl]
¡û
>C161063739
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355599
1355524
-
Val
TAC
[Ensembl]
¡û
>C161063740
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355485
1355410
-
Val
TAC
[Ensembl]
¡û
>C161063741
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355371
1355296
-
Val
TAC
[Ensembl]
¡û
>C161063742
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355257
1355182
-
Val
TAC
[Ensembl]
¡û
>C161063743
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355142
1355065
-
Val
TAC
[Ensembl]
¡û
>C161063744
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355027
1354952
-
Val
TAC
[Ensembl]
¡û
>C161083197
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2562974
2563049
+
Val
TAC
-
¡û
>C161083198
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563088
2563163
+
Val
TAC
-
¡û
>C161083199
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563202
2563279
+
Val
TAC
-
¡û
>C161083200
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563317
2563392
+
Val
TAC
-
¡û
>C161083201
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563431
2563508
+
Val
TAC
-
¡û
>C161083202
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563546
2563623
+
Val
TAC
-
¡û
>C161083203
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2563661
2563736
+
Val
TAC
-
¡û
>C161095501
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2228655
2228730
+
Val
TAC
-
¡û
>C161095502
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2228763
2228838
+
Val
TAC
-
¡û
>C161095503
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2228871
2228946
+
Val
TAC
-
¡û
>C161095504
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2228979
2229054
+
Val
TAC
-
¡û
>C161095505
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2229087
2229164
+
Val
TAC
-
¡û
>C161095506
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2229195
2229270
+
Val
TAC
-
¡û
>C161095507
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2229303
2229380
+
Val
TAC
-
¡û
>W1730034581
MTDC01000229
Bacteroidota
Flavobacterium covae columnare [MTDC]
3307
3381
+
Val
TAC
[ENA]
¡û
>W1710549163
FOEI01000001
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
697168
697245
+
Val
TAC
[ENA]
¡û
>W1710549196
FOEI01000010
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
53048
53125
+
Val
TAC
[ENA]
¡û
>W1710588381
FQZH01000002
Bacteroidota
Flavobacterium haoranii [FQZH]
150234
150157
-
Val
TAC
[ENA]
¡û
>W1710588435
FQZI01000005
Bacteroidota
Flavobacterium terrae [FQZI]
229893
229816
-
Val
TAC
[ENA]
¡û
>W1710588436
FQZI01000005
Bacteroidota
Flavobacterium terrae [FQZI]
229787
229710
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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