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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127421 (9 seq.)
>A171002097
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
877758
877832
+
Glu
TTC
-
¡û
>A171003667
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1896188
1896263
+
Glu
TTC
-
¡û
>A171005675
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1746521
1746447
-
Glu
TTC
-
¡û
>A171006106
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
668862
668936
+
Glu
TTC
-
¡û
>A178000381
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
834190
834280
+
Glu
TTC
-
¡û
>WENV181408895
OGCH01020931
[OGCH] hot springs metagenome; hot springs
108
183
+
Glu
TTC
[ENA]
¢þ
>At0614
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
788605
788695
+
Glu
TTC
[Ensembl]
¡û
>WENV170779105
LZCG01000972
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1328
1253
-
Glu
TTC
[ENA]
¢þ
>WENV170779202
LZQN01000010
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
22146
22221
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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