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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127425 (19 seq.)
>A171002091
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
408145
408220
+
Met
CAT
-
¡û
>A171003654
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1182937
1183011
+
Met
CAT
-
¡û
>A171003824
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
2197845
2197771
-
Met
CAT
-
¡û
>A171005699
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
272729
272655
-
Met
CAT
-
¡û
>A171006115
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
1425881
1425955
+
Met
CAT
-
¡û
>WENV180287198
OBIK01001468
[OBIK] hydrothermal vent metagenome; sea water
1735
1659
-
Ile2
CAT
[ENA]
¢þ
>WENV181213018
OFBU01004754
[OFBU] metagenome; hydrothermal vent
1275
1349
+
Ile2
CAT
[ENA]
¢þ
>WENV181213591
OFBV01011629
[OFBV] metagenome; hydrothermal vent
205
282
+
Met
CAT
[ENA]
¢þ
>WENV181213939
OFBW01003200
[OFBW] metagenome; hydrothermal vent
343
420
+
Ile2
CAT
[ENA]
¢þ
>WENV181215976
OFCB01000686
[OFCB] metagenome; hydrothermal vent
367
444
+
Ile2
CAT
[ENA]
¢þ
>WENV170675816
LDZQ01000602
[LDZQ] terrestrial metagenome; oil reservoir sample I2
15596
15519
-
Met
CAT
[ENA]
¢þ
>WENV170676385
LDZR01002375
[LDZR] terrestrial metagenome; oil reservoir sample K2
11730
11807
+
Met
CAT
[ENA]
¢þ
>At0649
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
2024579
2024505
-
Met
CAT
[Ensembl]
¡û
>WENV170779016
LZCG01000032
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
6934
6860
-
Met
CAT
[ENA]
¢þ
>WENV170779233
LZQN01000032
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
11171
11097
-
Met
CAT
[ENA]
¢þ
>W1910200384
FJNF01000196
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
37172
37098
-
Met
CAT
[ENA]
¡û
>W1610001596
ACYZ01000007
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
62151
62077
-
Met
CAT
[ENA]
¡û
>W1610612343
LGEQ01000029
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
15596
15519
-
Met
CAT
[ENA]
¡û
>W1610612603
LGEX01000017
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
11730
11807
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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