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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127426 (21 seq.)
>A171002182
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1727104
1727027
-
Ile
GAT
-
¡û
>A171002318
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
443696
443619
-
Ile
GAT
-
¡û
>A171003271
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1196909
1196986
+
Ile
GAT
-
¡û
>A171003665
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1857354
1857430
+
Ile
GAT
-
¡û
>A171003846
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
65148
65074
-
Ile
GAT
-
¡û
>A171005887
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1953291
1953214
-
Ile
GAT
-
¡û
>A171007502
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1397040
1397117
+
Ile
GAT
-
¡û
>A178000233
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
73965
74057
+
Ile
GAT
-
¡û
>WENV181409026
OGCH01036820
[OGCH] hot springs metagenome; hot springs
436
510
+
Ile
GAT
[ENA]
¢þ
>At0624
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
73342
73268
-
Ile
GAT
[Ensembl]
¡û
>At1813
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1103101
1103024
-
Ile
GAT
[Ensembl]
¡û
>At1898
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1140795
1140718
-
Ile
GAT
[Ensembl]
¡û
>WENV170675786
LDZQ01000575
[LDZQ] terrestrial metagenome; oil reservoir sample I2
49367
49293
-
Ile
GAT
[ENA]
¢þ
>WENV170676373
LDZR01002362
[LDZR] terrestrial metagenome; oil reservoir sample K2
13314
13388
+
Ile
GAT
[ENA]
¢þ
>WENV170779297
LZQN01000239
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
1507
1581
+
Ile
GAT
[ENA]
¢þ
>W1910200347
FJNF01000046
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
2215
2141
-
Ile
GAT
[ENA]
¡û
>W1910229997
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
6055
5978
-
Ile
GAT
[ENA]
¡û
>W1610005295
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
526801
526724
-
Ile
GAT
[ENA]
¡û
>W1610612313
LGEQ01000002
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
49367
49293
-
Ile
GAT
[ENA]
¡û
>W1610612591
LGEX01000004
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
13314
13388
+
Ile
GAT
[ENA]
¡û
>W1610638235
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
119249
119172
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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