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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127451 (50 seq.)
>W1711224151
LXTV01000002
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
12051
11974
-
Pro
GGG
[ENA]
¡û
>W131163804
ARAA01000079
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
161790
161867
+
Pro
GGG
[ENA]
¡û
>W131186378
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
1142527
1142450
-
Pro
GGG
[ENA]
¡û
>C171115929
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4625700
4625777
+
Pro
GGG
-
¡û
>C171131961
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
4111936
4111859
-
Pro
GGG
-
¡û
>C004111
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4618617
4618540
-
Pro
GGG
[Ensembl]
¡û
>w026471
ABAY01000049
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
32758
32679
-
Pro
GGG
[ENA]
¡û
>WENV180283003
OBIC01060531
[OBIC] beach sand metagenome; beach sand
154
231
+
Pro
GGG
[ENA]
¢þ
>W141066865
ARYJ01000011
Alphaproteobacteria
Hyphomonas jannaschiana VP2 [ARYJ]
70890
70967
+
Pro
GGG
[ENA]
¡û
>WENV181166994
OEIU01005884
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3340
3417
+
Pro
GGG
[ENA]
¢þ
>WENV181312109
OFJB01043496
[OFJB] sludge metagenome; sludge
480
557
+
Pro
GGG
[ENA]
¢þ
>W141136052
AWFD01000002
Alphaproteobacteria
Hyphomonas sp. CY54-11-8 [AWFD]
34812
34735
-
Pro
GGG
[ENA]
¡û
>WENV181416932
OGCL01182560
[OGCL] hot springs metagenome; Hot spring water
90
165
+
Pro
GGG
[ENA]
¢þ
>W141214004
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
827309
827232
-
Pro
GGG
[ENA]
¡û
>WENV182409031
OIFG01000545
[OIFG] human gut metagenome; stool
336
413
+
Pro
GGG
[ENA]
¢þ
>C08006447
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
6886065
6885991
-
Pro
GGG
[Ensembl]
¡û
>W141276736
JAEA01000011
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
156037
156114
+
Pro
GGG
[ENA]
¡û
>WENV182962849
OKWO01000809
[OKWO] human gut metagenome; stool
1549
1626
+
Pro
GGG
[ENA]
¢þ
>WENV182962990
OKWP01000063
[OKWP] human gut metagenome; stool
12778
12701
-
Pro
GGG
[ENA]
¢þ
>WENV182966383
OKWV01003932
[OKWV] human gut metagenome; stool
114
37
-
Pro
GGG
[ENA]
¢þ
>WENV183745337
PJUL01027523
[PJUL] feces metagenome; Chicken feces enriched on filter paper
245
322
+
Pro
GGG
[ENA]
¢þ
>WENV170002545
AGTN01063575
[AGTN] bioreactor metagenome; poplar biomass
165
88
-
Pro
GGG
[ENA]
¢þ
>WENV170004633
AGTN01742124
[AGTN] bioreactor metagenome; poplar biomass
301
224
-
Pro
GGG
[ENA]
¢þ
>WENV170709053
LNFM01000084
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
103569
103646
+
Pro
GGG
[ENA]
¢þ
>WENV170779531
LZQP01000391
[LZQP] oil field metagenome; sample BH-FW-16 from oil reservoir
128
205
+
Pro
GGG
[ENA]
¢þ
>WENV170821109
MDSY01016631
[MDSY] marine metagenome; seawater
30
107
+
Pro
GGG
[ENA]
¢þ
>WENV170898528
MDTD01127486
[MDTD] marine metagenome; seawater
5036
5113
+
Pro
GGG
[ENA]
¢þ
>WENV170922110
MDTG01025785
[MDTG] marine metagenome; seawater
29271
29194
-
Pro
GGG
[ENA]
¢þ
>WENV170922669
MDTG01035133
[MDTG] marine metagenome; seawater
57
134
+
Pro
GGG
[ENA]
¢þ
>W141821094
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1781675
1781598
-
Pro
GGG
[ENA]
¡û
>W1910004710
AWFE01000058
Alphaproteobacteria
Hyphomonas sp. GM-8P [AWFE]
77767
77844
+
Pro
GGG
[ENA]
¡û
>C09107857
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
7125234
7125157
-
Pro
GGG
[Ensembl]
¡û
>W1911148325
NPET01000027
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
44133
44210
+
Pro
GGG
[ENA]
¡û
>W1911219118
NRRJ01000020
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
66449
66526
+
Pro
GGG
[ENA]
¡û
>W1911653537
QDFX01000022
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
38
115
+
Pro
GGG
[ENA]
¡û
>W1810534733
QDAH01000027
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
69413
69490
+
Pro
GGG
[ENA]
¡û
>W1810658580
QJJK01000003
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
42081
42004
-
Pro
GGG
[ENA]
¡û
>W10110070
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
310827
310750
-
Pro
GGG
[ENA]
¡û
>W11112507
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
310827
310750
-
Pro
GGG
[ENA]
¡û
>W1510741147
CYHC01000019
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
28311
28388
+
Pro
GGG
[ENA]
¡û
>W1511624266
LCYG01000023
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
21729
21652
-
Pro
GGG
[ENA]
¡û
>C161053881
CP013244
Alphaproteobacteria
Candidatus Viadribacter manganicus A272 [CP013244]
203782
203859
+
Pro
GGG
[Ensembl]
¡û
>W121110779
ALIQ01000053
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
9960
10037
+
Pro
GGG
[ENA]
¡û
>W121127121
CAFI01000122
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
14916
14839
-
Pro
GGG
[ENA]
¡û
>W121127170
CAFJ01000223
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
19250
19173
-
Pro
GGG
[ENA]
¡û
>C131000809
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3794215
3794292
+
Pro
GGG
[Ensembl]
¡û
>W1610631781
LIOL01000019
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
28311
28388
+
Pro
GGG
[ENA]
¡û
>W1611008522
LXTV01000002
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
12051
11974
-
Pro
GGG
[ENA]
¡û
>W1710609876
FYDG01000015
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
20887
20810
-
Pro
GGG
[ENA]
¡û
>W1710764666
LIOL01000019
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
28311
28388
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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