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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127573 (55 seq.)
>W1711129933
LUUM01000024
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
33511
33595
+
Tyr
GTA
[ENA]
¡û
>W1711179433
LWHQ01000037
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31888
31804
-
Tyr
GTA
[ENA]
¡û
>W1711179434
LWHQ01000037
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31648
31564
-
Tyr
GTA
[ENA]
¡û
>W1711506010
MKWA01000012
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
9753
9669
-
Tyr
GTA
[ENA]
¡û
>W131163841
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
2062195
2062111
-
Tyr
GTA
[ENA]
¡û
>W131166474
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
506714
506798
+
Tyr
GTA
[ENA]
¡û
>WENV180020036
FTCV01000863
[FTCV] metagenome; soil
8301
8217
-
Tyr
GTA
[ENA]
¢þ
>WENV181307908
OFIS01000028
[OFIS] sludge metagenome; sludge
189542
189458
-
Tyr
GTA
[ENA]
¢þ
>WENV181401735
OFTX01004521
[OFTX] sludge metagenome; sludge
1203
1287
+
Tyr
GTA
[ENA]
¢þ
>WENV181402272
OFTY01000400
[OFTY] sludge metagenome; sludge
779
695
-
Tyr
GTA
[ENA]
¢þ
>W08006160
ABIP01000043
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
39499
39583
+
Tyr
GTA
[ENA]
¡û
>W141220792
AZYE01002212
Alphaproteobacteria
Microvirga lupini [AZYE]
40777
40861
+
Tyr
GTA
[ENA]
¡û
>W141276723
JAEA01000006
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
3663
3579
-
Tyr
GTA
[ENA]
¡û
>C08001583
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
1547233
1547317
+
Tyr
GTA
[Ensembl]
¡û
>WENV170557169
CXWL01020513
[CXWL] groundwater metagenome; biofilm material
1152
1236
+
Tyr
GTA
[ENA]
¢þ
>WENV170706770
LNAP01006382
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
452
368
-
Tyr
GTA
[ENA]
¢þ
>C181020295
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4412179
4412263
+
Tyr
GTA
-
¡û
>C181089631
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
3401513
3401597
+
Tyr
GTA
-
¡û
>C181179098
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1689172
1689256
+
Tyr
GTA
-
¡û
>C181180107
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4074261
4074345
+
Tyr
GTA
-
¡û
>C181180108
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4074914
4074998
+
Tyr
GTA
-
¡û
>W141701400
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
3020150
3020234
+
Tyr
GTA
[ENA]
¡û
>W141821221
JQNK01000009
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
2593946
2594030
+
Tyr
GTA
[ENA]
¡û
>W1910501726
FYAS01000028
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
55289
55205
-
Tyr
GTA
[ENA]
¡û
>W1911653582
QDGA01000030
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
54734
54818
+
Tyr
GTA
[ENA]
¡û
>W1911708558
QOWC01000040
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
8628
8544
-
Tyr
GTA
[ENA]
¡û
>W1810079857
PELK01000090
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
514
598
+
Tyr
GTA
[ENA]
¡û
>W1810534744
QDAH01000054
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
35048
35132
+
Tyr
GTA
[ENA]
¡û
>W1810735526
QOIO01000110
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
1245
1161
-
Tyr
GTA
[ENA]
¡û
>W1810763400
QQBB01000002
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
411589
411673
+
Tyr
GTA
[ENA]
¡û
>W1810789353
QRGO01000001
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
2714589
2714673
+
Tyr
GTA
[ENA]
¡û
>W1511507872
JXOD01000047
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
23818
23734
-
Tyr
GTA
[ENA]
¡û
>W1511507873
JXOD01000047
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
23578
23494
-
Tyr
GTA
[ENA]
¡û
>W1511563256
LABX01000167
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
19409
19493
+
Tyr
GTA
[ENA]
¡û
>W1511563257
LABX01000170
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
31832
31748
-
Tyr
GTA
[ENA]
¡û
>W1511563335
LABY01000267
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
1401
1485
+
Tyr
GTA
[ENA]
¡û
>W1511563366
LABZ01000125
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
12963
13047
+
Tyr
GTA
[ENA]
¡û
>W1511563367
LABZ01000125
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
13199
13283
+
Tyr
GTA
[ENA]
¡û
>W121068040
AJUA01000075
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
483260
483344
+
Tyr
GTA
[ENA]
¡û
>W1610590479
LDRM01000018
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
56033
56117
+
Tyr
GTA
[ENA]
¡û
>W1610590480
LDRM01000018
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
56267
56351
+
Tyr
GTA
[ENA]
¡û
>W1610590555
LDRN01000068
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
60877
60793
-
Tyr
GTA
[ENA]
¡û
>W1610590556
LDRN01000068
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
60643
60559
-
Tyr
GTA
[ENA]
¡û
>W1610941006
LUUM01000024
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
33511
33595
+
Tyr
GTA
[ENA]
¡û
>W1610987334
LWHQ01000037
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31888
31804
-
Tyr
GTA
[ENA]
¡û
>W1610987335
LWHQ01000037
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31648
31564
-
Tyr
GTA
[ENA]
¡û
>W1710507591
FMVJ01000017
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
5185
5101
-
Tyr
GTA
[ENA]
¡û
>W1710527747
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
657010
657094
+
Tyr
GTA
[ENA]
¡û
>W1710535977
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
1667302
1667386
+
Tyr
GTA
[ENA]
¡û
>W1710548820
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
20687
20771
+
Tyr
GTA
[ENA]
¡û
>W1710548821
FOEB01000009
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
20921
21005
+
Tyr
GTA
[ENA]
¡û
>W1710709759
LDRM01000018
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
56033
56117
+
Tyr
GTA
[ENA]
¡û
>W1710709760
LDRM01000018
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
56267
56351
+
Tyr
GTA
[ENA]
¡û
>W1710709835
LDRN01000068
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
60877
60793
-
Tyr
GTA
[ENA]
¡û
>W1710709836
LDRN01000068
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
60643
60559
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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