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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127757 (22 seq.)
>A171001910
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1795703
1795627
-
Gly
GCC
-
¡û
>A171004260
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1152249
1152172
-
Gly
GCC
-
¡û
>A171004323
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
61774
61851
+
Gly
GCC
-
¡û
>A171006393
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2695820
2695744
-
Gly
GCC
-
¡û
>A171006833
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1487389
1487464
+
Gly
GCC
-
¡û
>WENV180038780
LLBY010005390
[LLBY] soil metagenome; soil from tomato rhizosphere
40526
40600
+
Gly
GCC
[ENA]
¢þ
>WENV180040721
LLBZ010009074
[LLBZ] soil metagenome; soil from tomato rhizosphere
6816
6742
-
Gly
GCC
[ENA]
¢þ
>WENV180291241
OBIV01024302
[OBIV] soil metagenome; Clay
320
394
+
Gly
GCC
[ENA]
¢þ
>WENV180315217
OBKH01039891
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
83
159
+
Gly
GCC
[ENA]
¢þ
>WENV180327261
OBKT01024766
[OBKT] soil metagenome; soil
304
229
-
Gly
GCC
[ENA]
¢þ
>WENV180690138
OCZS010000018
[OCZS] soil metagenome; soil
19889
19963
+
Gly
GCC
[ENA]
¢þ
>WENV180690172
OCZS010000200
[OCZS] soil metagenome; soil
5448
5374
-
Gly
GCC
[ENA]
¢þ
>WENV180690586
OCZS010012655
[OCZS] soil metagenome; soil
1097
1023
-
Gly
GCC
[ENA]
¢þ
>WENV180690796
OCZS010025560
[OCZS] soil metagenome; soil
11
85
+
Gly
GCC
[ENA]
¢þ
>WENV181164006
OEIR01001030
[OEIR] soil metagenome; soil
756
832
+
Gly
GCC
[ENA]
¢þ
>WENV183702465
PDVI01000070
[PDVI] alkali sediment metagenome; glacial lake sediment
758
834
+
Gly
GCC
[ENA]
¢þ
>WENV170566572
FKKE01050763
[FKKE] freshwater metagenome; freshwater
653
730
+
Gly
GCC
[ENA]
¢þ
>WENV170991095
MWWA01109503
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
70
144
+
Gly
GCC
[ENA]
¢þ
>WENV170993123
MWWB01190469
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
342
268
-
Gly
GCC
[ENA]
¢þ
>WENV170999287
MWWK01016917
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
924
850
-
Gly
GCC
[ENA]
¢þ
>W1910760388
MNEV01000039
Nitrososphaerota
Candidatus Nitrososphaera sp. 13_1_40CM_48_12 [MNEV]
23147
23225
+
Gly
GCC
[ENA]
¡û
>W1910760391
MNFA01000012
Nitrososphaerota
Thaumarchaeota archaeon 13_1_40CM_4_48_7 [MNFA]
7274
7196
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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