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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127865 (66 seq.)
>W131237902
AUSE01000028
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
1466
1543
+
Ile
GAT
[ENA]
¡û
>WENV180111167
OAPN01035954
[OAPN] marine metagenome; 2011
135
59
-
Ile
GAT
[ENA]
¢þ
>WENV180357426
OBNN01008990
[OBNN] marine metagenome; Coastal water
742
818
+
Ile
GAT
[ENA]
¢þ
>WENV180364230
OBNZ01159821
[OBNZ] marine metagenome; ENVO:00002010
234
158
-
Ile
GAT
[ENA]
¢þ
>WENV180377282
OBON01007916
[OBON] marine metagenome; sea water
939
1015
+
Ile
GAT
[ENA]
¢þ
>WENV180591271
OCOV01006608
[OCOV] marine metagenome; ENVO:01000301
504
428
-
Ile
GAT
[ENA]
¢þ
>WENV181320542
OFKI01000113
[OFKI] marine metagenome; seawater
23
98
+
Ile
GAT
[ENA]
¢þ
>WENV181325341
OFLI01046844
[OFLI] seawater metagenome; seawater
6
81
+
Ile
GAT
[ENA]
¢þ
>WENV181367514
OFQB01005204
[OFQB] freshwater metagenome; Freshwater Lake
678
754
+
Ile
GAT
[ENA]
¢þ
>WENV181368453
OFQL01006120
[OFQL] freshwater metagenome; Freshwater Lake
808
884
+
Ile
GAT
[ENA]
¢þ
>WENV181368869
OFQN01002325
[OFQN] freshwater metagenome; Freshwater Lake
1418
1342
-
Ile
GAT
[ENA]
¢þ
>WENV181369417
OFQP01001796
[OFQP] freshwater metagenome; Freshwater Lake
1423
1347
-
Ile
GAT
[ENA]
¢þ
>WENV181369911
OFQR01002239
[OFQR] freshwater metagenome; Freshwater Lake
972
896
-
Ile
GAT
[ENA]
¢þ
>WENV181370267
OFQS01001562
[OFQS] freshwater metagenome; Freshwater Lake
1369
1293
-
Ile
GAT
[ENA]
¢þ
>WENV181384036
OFRH01009031
[OFRH] wastewater metagenome; Exp Tend NO 100WW
798
722
-
Ile
GAT
[ENA]
¢þ
>WENV181384942
OFRI01021415
[OFRI] wastewater metagenome; Exp Tend VB 90WW
293
217
-
Ile
GAT
[ENA]
¢þ
>WENV181385786
OFRK01003522
[OFRK] marine metagenome; sea ice
330
405
+
Ile
GAT
[ENA]
¢þ
>WENV181400638
OFSF01015137
[OFSF] wastewater metagenome; Exp Tend VB 100WW
932
1007
+
Ile
GAT
[ENA]
¢þ
>WENV181401044
OFSF01045659
[OFSF] wastewater metagenome; Exp Tend VB 100WW
327
251
-
Ile
GAT
[ENA]
¢þ
>WENV181843131
OGVU01001345
[OGVU] freshwater metagenome; freshwater
2490
2414
-
Ile
GAT
[ENA]
¢þ
>WENV001933
AACY020054386
Marine microbial communities from Global Ocean Sampling (GOS)
509
432
-
Ile
GAT
[ENA]
>WENV183618785
OOFO01048174
[OOFO] marine metagenome; seawater
7
82
+
Ile
GAT
[ENA]
¢þ
>WENV183629763
OOGQ01006781
[OOGQ] marine metagenome; seawater
325
400
+
Ile
GAT
[ENA]
¢þ
>WENV183629985
OOGR01002143
[OOGR] marine metagenome; seawater
381
306
-
Ile
GAT
[ENA]
¢þ
>WENV183631243
OOGU01058185
[OOGU] marine metagenome; sea ice
429
354
-
Ile
GAT
[ENA]
¢þ
>WENV002038
AACY020057270
Marine microbial communities from Global Ocean Sampling (GOS)
294
217
-
Ile
GAT
[ENA]
>WENV170572066
FLOH01000508
[FLOH] marine metagenome; water
52644
52721
+
Ile
GAT
[ENA]
¢þ
>WENV170572299
FLOH01000713
[FLOH] marine metagenome; water
62595
62518
-
Ile
GAT
[ENA]
¢þ
>WENV170573092
FLOH01006226
[FLOH] marine metagenome; water
154
77
-
Ile
GAT
[ENA]
¢þ
>WENV170598463
FUWD010036267
[FUWD] metagenome; unknown
428
351
-
Ile
GAT
[ENA]
¢þ
>WENV170604040
FUWD010355770
[FUWD] metagenome; unknown
391
314
-
Ile
GAT
[ENA]
¢þ
>WENV170604181
FUWD010372226
[FUWD] metagenome; unknown
358
283
-
Ile
GAT
[ENA]
¢þ
>WENV170617569
FUWD012930470
[FUWD] metagenome; unknown
563
640
+
Ile
GAT
[ENA]
¢þ
>WENV170617570
FUWD012930471
[FUWD] metagenome; unknown
350
427
+
Ile
GAT
[ENA]
¢þ
>WENV170618364
FUWD012964737
[FUWD] metagenome; unknown
638
561
-
Ile
GAT
[ENA]
¢þ
>WENV170619947
FUWD013023392
[FUWD] metagenome; unknown
10706
10629
-
Ile
GAT
[ENA]
¢þ
>WENV170626705
FUWD013228993
[FUWD] metagenome; unknown
13652
13575
-
Ile
GAT
[ENA]
¢þ
>WENV170627309
FUWD013232585
[FUWD] metagenome; unknown
656
733
+
Ile
GAT
[ENA]
¢þ
>WENV170627485
FUWD013232947
[FUWD] metagenome; unknown
35714
35791
+
Ile
GAT
[ENA]
¢þ
>WENV170628074
FUWD013241467
[FUWD] metagenome; unknown
10706
10629
-
Ile
GAT
[ENA]
¢þ
>WENV170645631
JNSL01000101
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12791
12716
-
Ile
GAT
[ENA]
¢þ
>WENV170952956
MEHZ011622381
[MEHZ] marine metagenome; marine surface water
378
301
-
Ile
GAT
[ENA]
¢þ
>C181018645
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
240909
240985
+
Ile
GAT
-
¡û
>C181018712
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
246348
246272
-
Ile
GAT
-
¡û
>C181020831
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
9368
9444
+
Ile
GAT
-
¡û
>C181020894
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1326841
1326765
-
Ile
GAT
-
¡û
>C181020968
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1334259
1334183
-
Ile
GAT
-
¡û
>C181021004
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1309717
1309641
-
Ile
GAT
-
¡û
>C181021040
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1299478
1299402
-
Ile
GAT
-
¡û
>C181021152
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1313073
1312997
-
Ile
GAT
-
¡û
>C181021188
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1292935
1292859
-
Ile
GAT
-
¡û
>C181021239
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
9419
9495
+
Ile
GAT
-
¡û
>C181021302
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1234444
1234368
-
Ile
GAT
-
¡û
>C181021352
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
9458
9534
+
Ile
GAT
-
¡û
>WENV030761
AACY021308819
Marine microbial communities from Global Ocean Sampling (GOS)
466
389
-
Ile
GAT
[ENA]
>SRA1045198
SRR035093.26447
454 Sequencing (SRP001814)
59
136
+
Ile
GAT
[SRA]
>SRA1045544
SRR035093.117295
454 Sequencing (SRP001814)
341
264
-
Ile
GAT
[SRA]
>SRA1047089
SRR035093.452836
454 Sequencing (SRP001814)
429
352
-
Ile
GAT
[SRA]
>SRA1052494
SRR035098.214847
454 Sequencing (SRP001819)
419
342
-
Ile
GAT
[SRA]
>WENV057274
AACY023289938
Marine microbial communities from Global Ocean Sampling (GOS)
956
1033
+
Ile
GAT
[ENA]
>WENV057843
AACY023308524
Marine microbial communities from Global Ocean Sampling (GOS)
551
474
-
Ile
GAT
[ENA]
>WENV058096
AACY023317354
Marine microbial communities from Global Ocean Sampling (GOS)
258
181
-
Ile
GAT
[ENA]
>WENV058407
AACY023328273
Marine microbial communities from Global Ocean Sampling (GOS)
723
800
+
Ile
GAT
[ENA]
>WENV058594
AACY023334958
Marine microbial communities from Global Ocean Sampling (GOS)
422
499
+
Ile
GAT
[ENA]
>W1610625349
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
10077
10000
-
Ile
GAT
[ENA]
¡û
>W1710756476
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
10077
10000
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK