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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127892 (13 seq.)
>C025658
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1736473
1736550
+
Asp
GTC
-
¡û
>C08010991
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
584238
584315
+
Asp
GTC
[Ensembl]
¡û
>C08010908
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1110162
1110088
-
Asp
GTC
[Ensembl]
¡û
>WENV170676076
LDZR01000784
[LDZR] terrestrial metagenome; oil reservoir sample K2
423
346
-
Asp
GTC
[ENA]
¢þ
>WENV170676780
LDZS01002335
[LDZS] terrestrial metagenome; oil reservoir sample K3
259
182
-
Asp
GTC
[ENA]
¢þ
>W141561645
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
552637
552560
-
Asp
GTC
[ENA]
¡û
>W09106551
AAWB01000005
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
17248
17171
-
Asp
GTC
[ENA]
¡û
>C141000327
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
577398
577475
+
Asp
GTC
-
¡û
>C151001701
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1692923
1692846
-
Asp
GTC
-
¡û
>W1610540318
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
30044
29967
-
Asp
GTC
[ENA]
¡û
>W1610612896
LGFF01000163
Thermotogota
Pseudothermotoga lettingae [LGFF]
423
346
-
Asp
GTC
[ENA]
¡û
>W1710643339
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
30044
29967
-
Asp
GTC
[ENA]
¡û
>W1710734178
LGFF01000163
Thermotogota
Pseudothermotoga lettingae [LGFF]
423
346
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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