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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128241 (75 seq.)
>W131204930
ATCI01000019
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
62489
62412
-
Val
TAC
[ENA]
¡û
>W141042753
AMET01000208
Bacteroidota
Capnocytophaga sp. oral taxon 332 oral taxon 332 str. F0381 [AMET]
71
148
+
Val
TAC
[ENA]
¡û
>W141042781
AMEU01000120
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
185
262
+
Val
TAC
[ENA]
¡û
>WENV180720384
ODGJ01040038
[ODGJ] human metagenome; G_DNA_Tongue dorsum
103
178
+
Val
TAC
[ENA]
¢þ
>WENV180727439
ODGU01005473
[ODGU] human metagenome; G_DNA_Supragingival plaque
6439
6362
-
Val
TAC
[ENA]
¢þ
>WENV180727572
ODGU01007970
[ODGU] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180732054
ODGW01093340
[ODGW] human metagenome; G_DNA_Supragingival plaque
77
152
+
Val
TAC
[ENA]
¢þ
>WENV180750762
ODHS01007514
[ODHS] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV180751678
ODHS01106158
[ODHS] human metagenome; G_DNA_Supragingival plaque
329
254
-
Val
TAC
[ENA]
¢þ
>WENV180779523
ODIN01006208
[ODIN] human metagenome; G_DNA_Throat
2556
2631
+
Val
TAC
[ENA]
¢þ
>WENV180795525
ODJB01000022
[ODJB] human metagenome; G_DNA_Supragingival plaque
140444
140369
-
Val
TAC
[ENA]
¢þ
>WENV180796590
ODJB01007629
[ODJB] human metagenome; G_DNA_Supragingival plaque
228
303
+
Val
TAC
[ENA]
¢þ
>WENV180800702
ODJD01000513
[ODJD] human metagenome; G_DNA_Supragingival plaque
17892
17817
-
Val
TAC
[ENA]
¢þ
>WENV180801423
ODJD01030486
[ODJD] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180807027
ODJI01000318
[ODJI] human metagenome; G_DNA_Tongue dorsum
2
77
+
Val
TAC
[ENA]
¢þ
>WENV180822352
ODJT01000424
[ODJT] human metagenome; G_DNA_Supragingival plaque
1286
1361
+
Val
TAC
[ENA]
¢þ
>WENV180822909
ODJW01000560
[ODJW] human metagenome; G_DNA_Supragingival plaque
374
449
+
Val
TAC
[ENA]
¢þ
>WENV180823913
ODJX01000009
[ODJX] human metagenome; G_DNA_Supragingival plaque
106725
106800
+
Val
TAC
[ENA]
¢þ
>WENV180824890
ODJX01083829
[ODJX] human metagenome; G_DNA_Supragingival plaque
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180841793
ODKK01009327
[ODKK] human metagenome; G_DNA_Buccal mucosa
670
595
-
Val
TAC
[ENA]
¢þ
>WENV180842706
ODKM01151454
[ODKM] human metagenome; G_DNA_Buccal mucosa
112
187
+
Val
TAC
[ENA]
¢þ
>WENV180852355
ODKW01000497
[ODKW] human metagenome; G_DNA_Tongue dorsum
331
406
+
Val
TAC
[ENA]
¢þ
>WENV180852695
ODKW01003695
[ODKW] human metagenome; G_DNA_Tongue dorsum
4723
4648
-
Val
TAC
[ENA]
¢þ
>WENV180855449
ODKX01126663
[ODKX] human metagenome; G_DNA_Tongue dorsum
53
128
+
Val
TAC
[ENA]
¢þ
>WENV180860046
ODLD01013892
[ODLD] human metagenome; G_DNA_Supragingival plaque
1958
1883
-
Val
TAC
[ENA]
¢þ
>WENV180861207
ODLE01001348
[ODLE] human metagenome; G_DNA_Tongue dorsum
2
77
+
Val
TAC
[ENA]
¢þ
>WENV180891452
ODMQ01000165
[ODMQ] human metagenome; G_DNA_Supragingival plaque
2
77
+
Val
TAC
[ENA]
¢þ
>WENV180921996
ODTJ01000969
[ODTJ] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180922596
ODTJ01006489
[ODTJ] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180927982
ODTM01009106
[ODTM] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180928407
ODTM01045767
[ODTM] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180931243
ODTP01002266
[ODTP] human metagenome; G_DNA_Tongue dorsum
11142
11067
-
Val
TAC
[ENA]
¢þ
>WENV180938134
ODTX01000713
[ODTX] human metagenome; G_DNA_Supragingival plaque
23805
23730
-
Val
TAC
[ENA]
¢þ
>WENV180943963
ODUC01005261
[ODUC] human metagenome; G_DNA_Supragingival plaque
5855
5778
-
Val
TAC
[ENA]
¢þ
>WENV180944530
ODUC01021141
[ODUC] human metagenome; G_DNA_Supragingival plaque
96
171
+
Val
TAC
[ENA]
¢þ
>WENV180948347
ODUG01000874
[ODUG] human metagenome; G_DNA_Tongue dorsum
23468
23393
-
Val
TAC
[ENA]
¢þ
>WENV180955105
ODUJ01033320
[ODUJ] human metagenome; G_DNA_Tongue dorsum
231
306
+
Val
TAC
[ENA]
¢þ
>WENV180964203
ODUO01000522
[ODUO] human metagenome; G_DNA_Supragingival plaque
20624
20549
-
Val
TAC
[ENA]
¢þ
>WENV180977664
ODUZ01002951
[ODUZ] human metagenome; G_DNA_Tongue dorsum
1140
1215
+
Val
TAC
[ENA]
¢þ
>WENV180985140
ODVJ01000778
[ODVJ] human metagenome; G_DNA_Tongue dorsum
16199
16124
-
Val
TAC
[ENA]
¢þ
>WENV180990709
ODVN01003767
[ODVN] human metagenome; G_DNA_Tongue dorsum
6096
6021
-
Val
TAC
[ENA]
¢þ
>WENV180990911
ODVN01008516
[ODVN] human metagenome; G_DNA_Tongue dorsum
2763
2688
-
Val
TAC
[ENA]
¢þ
>WENV181005953
ODWA01000249
[ODWA] human metagenome; G_DNA_Buccal mucosa
21482
21407
-
Val
TAC
[ENA]
¢þ
>WENV181029864
ODXF01007263
[ODXF] human metagenome; G_DNA_Supragingival plaque
2036
1961
-
Val
TAC
[ENA]
¢þ
>WENV181052922
ODYG01089285
[ODYG] human metagenome; G_DNA_Tongue dorsum
149
74
-
Val
TAC
[ENA]
¢þ
>WENV181059509
ODYM01001882
[ODYM] human metagenome; G_DNA_Tongue dorsum
2
77
+
Val
TAC
[ENA]
¢þ
>WENV181064030
ODYP01008198
[ODYP] human metagenome; G_DNA_Supragingival plaque
1692
1767
+
Val
TAC
[ENA]
¢þ
>WENV181067791
ODZI01054623
[ODZI] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV181069827
OEAE01000006
[OEAE] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV181070258
OEAE01000534
[OEAE] human metagenome; G_DNA_Supragingival plaque
24173
24098
-
Val
TAC
[ENA]
¢þ
>WENV181075204
OEAO01084772
[OEAO] human metagenome; G_DNA_Tongue dorsum
41
116
+
Val
TAC
[ENA]
¢þ
>WENV181084621
OEAX01000003
[OEAX] human metagenome; G_DNA_Tongue dorsum
176119
176194
+
Val
TAC
[ENA]
¢þ
>WENV181090798
OEBC01003936
[OEBC] human metagenome; G_DNA_Supragingival plaque
659
584
-
Val
TAC
[ENA]
¢þ
>WENV181091951
OEBC01153050
[OEBC] human metagenome; G_DNA_Supragingival plaque
321
396
+
Val
TAC
[ENA]
¢þ
>WENV181106774
OEEI01000159
[OEEI] human metagenome; G_DNA_Supragingival plaque
29282
29357
+
Val
TAC
[ENA]
¢þ
>WENV181107700
OEEI01017441
[OEEI] human metagenome; G_DNA_Supragingival plaque
108
183
+
Val
TAC
[ENA]
¢þ
>WENV181121635
OEFL01011591
[OEFL] human metagenome; G_DNA_Supragingival plaque
2110
2035
-
Val
TAC
[ENA]
¢þ
>WENV181123862
OEFQ01001682
[OEFQ] human metagenome; G_DNA_Supragingival plaque
6582
6657
+
Val
TAC
[ENA]
¢þ
>WENV181124028
OEFQ01005509
[OEFQ] human metagenome; G_DNA_Supragingival plaque
76
1
-
Val
TAC
[ENA]
¢þ
>WENV181124267
OEFQ01042443
[OEFQ] human metagenome; G_DNA_Supragingival plaque
208
283
+
Val
TAC
[ENA]
¢þ
>WENV181143302
OEHM01000390
[OEHM] human metagenome; G_DNA_Supragingival plaque
2
77
+
Val
TAC
[ENA]
¢þ
>WENV181146498
OEHQ01007280
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2405
2480
+
Val
TAC
[ENA]
¢þ
>WENV181146676
OEHQ01015721
[OEHQ] human metagenome; G_DNA_Supragingival plaque
83
158
+
Val
TAC
[ENA]
¢þ
>WENV181158428
OEIH01001312
[OEIH] human metagenome; G_DNA_Supragingival plaque
8437
8362
-
Val
TAC
[ENA]
¢þ
>WENV181177281
OEJS01000409
[OEJS] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181180687
OEJU01000624
[OEJU] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>W09108460
ABTH01000004
Bacteroidota
Capnocytophaga ochracea DSM 7271 [ABTH]
139402
139479
+
Val
TAC
[ENA]
¡û
>C181063552
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
50876
50801
-
Val
TAC
-
¡û
>C181063825
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
61043
60968
-
Val
TAC
-
¡û
>C181148021
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
1070036
1069961
-
Val
TAC
-
¡û
>C181148022
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
1069923
1069848
-
Val
TAC
-
¡û
>C10103690
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
2370306
2370383
+
Val
TAC
[Ensembl]
¡û
>W11141868
AEOH01000015
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
37648
37725
+
Val
TAC
[ENA]
¡û
>W11163208
AFHP01000104
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
23654
23577
-
Val
TAC
[ENA]
¡û
>W121003853
AFFY01000155
Bacteroidota
Paraprevotella clara YIT 11840 [AFFY]
133
56
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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