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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128413 (30 seq.)
>A171003636
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1129105
1129031
-
Met
CAT
-
¡û
>A171006640
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
156681
156607
-
Met
CAT
-
¡û
>A171007750
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1458879
1458805
-
Met
CAT
-
¡û
>A171007787
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1453056
1452982
-
Met
CAT
-
¡û
>W141000047
AADL01001090
Unclassified
mine drainage metagenome Group III [AADL]
19006
19080
+
Met
CAT
[ENA]
¡û
>W141000078
AADL01001501
Unclassified
mine drainage metagenome Group III [AADL]
22295
22220
-
Met
CAT
[ENA]
¡û
>W141000100
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
439
365
-
Met
CAT
[ENA]
¡û
>WENV180343192
OBLK01000139
[OBLK] soil metagenome; Clay
2287
2361
+
fMet
CAT
[ENA]
¢þ
>WENV180343262
OBLK01000803
[OBLK] soil metagenome; Clay
3358
3284
-
fMet
CAT
[ENA]
¢þ
>WENV181291653
OFHC01000254
[OFHC] soil metagenome; Clay
532
458
-
fMet
CAT
[ENA]
¢þ
>WENV181292297
OFHE01000058
[OFHE] soil metagenome; Clay
11557
11483
-
fMet
CAT
[ENA]
¢þ
>WENV181292330
OFHE01000366
[OFHE] soil metagenome; Clay
2179
2104
-
fMet
CAT
[ENA]
¢þ
>WENV181292471
OFHE01021685
[OFHE] soil metagenome; Clay
129
55
-
fMet
CAT
[ENA]
¢þ
>WENV181295026
OFHI01000005
[OFHI] soil metagenome; Clay
51324
51398
+
fMet
CAT
[ENA]
¢þ
>WENV181295045
OFHI01000026
[OFHI] soil metagenome; Clay
218
144
-
fMet
CAT
[ENA]
¢þ
>WENV181295090
OFHI01000184
[OFHI] soil metagenome; Clay
10968
10893
-
fMet
CAT
[ENA]
¢þ
>WENV181295624
OFHJ01000010
[OFHJ] soil metagenome; Clay
58477
58551
+
fMet
CAT
[ENA]
¢þ
>WENV181295810
OFHJ01000781
[OFHJ] soil metagenome; Clay
6781
6707
-
fMet
CAT
[ENA]
¢þ
>WENV170013420
AUZX01003852
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
66
140
+
Met
CAT
[ENA]
¢þ
>WENV170013708
AUZY01012521
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
354
428
+
Met
CAT
[ENA]
¢þ
>At1752
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
283497
283423
-
Met
CAT
[Ensembl]
¡û
>W1910469105
FWYE01000005
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
39019
38944
-
Met
CAT
[ENA]
¡û
>ENV09002028
ACXJ01007263
Mine drainage metagenome Contig1
1222
1148
-
Met
CAT
[ENA]
¡û
>ENV09002154
ACXJ01010560
Mine drainage metagenome Contig1
1601
1675
+
Met
CAT
[ENA]
¡û
>ENV09002207
ACXJ01011195
Mine drainage metagenome Contig1
9373
9299
-
Met
CAT
[ENA]
¡û
>ENV09002271
ACXJ01012592
Mine drainage metagenome Contig1
17341
17267
-
Met
CAT
[ENA]
¡û
>ENV09002328
ACXL01000016
Thermoplasmatales archaeon E-plasma EplasmaContig2057
39363
39289
-
Met
CAT
[ENA]
¡û
>W1610000073
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
256171
256097
-
Met
CAT
[ENA]
¡û
>WENV077055
AADL01001090
Acid Mine Drainage microbial communities from Richmond mine
19006
19083
+
Met
CAT
[ENA]
>WENV077107
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
439
362
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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