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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12845 (62 seq.)
>W1710821469
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
209137
209225
+
Ser
GCT
[ENA]
¡û
>W1711273433
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
326706
326615
-
Ser
GCT
[ENA]
¡û
>W1711273437
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
326291
326200
-
Ser
GCT
[ENA]
¡û
>W1711340548
MCBT01000011
Gammaproteobacteria
Shewanella colwelliana [MCBT]
158596
158505
-
Ser
GCT
[ENA]
¡û
>W1711624509
MPHJ01000031
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
5523
5432
-
Ser
GCT
[ENA]
¡û
>W1711624615
MPHK01000026
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
23354
23263
-
Ser
GCT
[ENA]
¡û
>W1711624620
MPHK01000026
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
22841
22750
-
Ser
GCT
[ENA]
¡û
>C020927
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1415392
1415483
+
Ser
GCT
[Ensembl]
¡û
>C020931
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1415835
1415926
+
Ser
GCT
[Ensembl]
¡û
>C021954
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
1257132
1257223
+
Ser
GCT
[Ensembl]
¡û
>C021958
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
1257540
1257631
+
Ser
GCT
[Ensembl]
¡û
>w027974
ABCQ01000039
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
21076
20983
-
Ser
GCT
[ENA]
¡û
>w027967
ABCQ01000039
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
22102
22009
-
Ser
GCT
[ENA]
¡û
>w007680
AAIU01000022
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
60865
60772
-
Ser
GCT
[ENA]
¡û
>W08005673
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35867
35779
-
Ser
GCT
[ENA]
¡û
>W08005679
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35142
35054
-
Ser
GCT
[ENA]
¡û
>WENV182545115
OJBM01000139
[OJBM] seawater metagenome; Sea water
22021
21930
-
Ser
GCT
[ENA]
¢þ
>W141276822
JAEC01000015
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
23635
23726
+
Ser
GCT
[ENA]
¡û
>W141276823
JAEC01000016
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
2
93
+
Ser
GCT
[ENA]
¡û
>W141277080
JAEH01000066
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
4686
4777
+
Ser
GCT
[ENA]
¡û
>WENV170023600
BCQL01000212
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
9751
9660
-
Ser
GCT
[ENA]
¢þ
>C181204257
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2494801
2494710
-
Ser
GCT
-
¡û
>C181214208
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3678656
3678565
-
Ser
GCT
-
¡û
>C181214214
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3677771
3677680
-
Ser
GCT
-
¡û
>W09103127
AAIV01000032
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
20232
20141
-
Ser
GCT
[ENA]
¡û
>W09103131
AAIV01000032
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
19824
19733
-
Ser
GCT
[ENA]
¡û
>C191173199
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
3527674
3527765
+
Ser
GCT
-
¡û
>C191173203
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
3528080
3528171
+
Ser
GCT
-
¡û
>C191185877
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3398787
3398696
-
Ser
GCT
-
¡û
>C191185881
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3398381
3398290
-
Ser
GCT
-
¡û
>W1910283066
FRDV01000008
Gammaproteobacteria
Moritella viscosa [FRDV]
48383
48474
+
Ser
GCT
[ENA]
¡û
>W1910283068
FRDV01000009
Gammaproteobacteria
Moritella viscosa [FRDV]
93
184
+
Ser
GCT
[ENA]
¡û
>W1910676772
MCTV01000068
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
153053
153144
+
Ser
GCT
[ENA]
¡û
>W1910676777
MCTV01000068
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
153566
153657
+
Ser
GCT
[ENA]
¡û
>W1910677507
MCUF01000078
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
4505
4414
-
Ser
GCT
[ENA]
¡û
>W1910679668
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
57474
57383
-
Ser
GCT
[ENA]
¡û
>W1910679673
MCVI01000021
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
56961
56870
-
Ser
GCT
[ENA]
¡û
>W1911551622
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
1060866
1060775
-
Ser
GCT
[ENA]
¡û
>W1911551627
OXJV01000001
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
1060316
1060225
-
Ser
GCT
[ENA]
¡û
>W1911710108
QPQU01000005
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
263655
263746
+
Ser
GCT
[ENA]
¡û
>W1911710112
QPQU01000005
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
264070
264161
+
Ser
GCT
[ENA]
¡û
>W1810155301
PJAP01000588
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
3901
3992
+
Ser
GCT
[ENA]
¡û
>W1810155927
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90355
90446
+
Ser
GCT
[ENA]
¡û
>W1810155934
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
91192
91283
+
Ser
GCT
[ENA]
¡û
>W1810156270
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2381249
2381158
-
Ser
GCT
[ENA]
¡û
>W1810156277
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2380412
2380321
-
Ser
GCT
[ENA]
¡û
>W1810156653
PJBL01000002
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
106759
106668
-
Ser
GCT
[ENA]
¡û
>W1810156660
PJBL01000002
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
105921
105830
-
Ser
GCT
[ENA]
¡û
>W1810156802
PJBM01000260
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
22909
22818
-
Ser
GCT
[ENA]
¡û
>W1810156809
PJBM01000260
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
22072
21981
-
Ser
GCT
[ENA]
¡û
>W1810157607
PJCA01000037
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
18908
18817
-
Ser
GCT
[ENA]
¡û
>W1810157742
PJCD01000002
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
172386
172295
-
Ser
GCT
[ENA]
¡û
>W1810157746
PJCD01000002
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
171977
171886
-
Ser
GCT
[ENA]
¡û
>C10112886
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3582195
3582104
-
Ser
GCT
[Ensembl]
¡û
>C10112891
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581492
3581401
-
Ser
GCT
[Ensembl]
¡û
>C10112896
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3580582
3580491
-
Ser
GCT
[Ensembl]
¡û
>C10112900
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3579784
3579693
-
Ser
GCT
[Ensembl]
¡û
>W121113028
ALOE01000029
Gammaproteobacteria
Moritella marina ATCC 15381 [ALOE]
18815
18724
-
Ser
GCT
[ENA]
¡û
>W121102679
AKXQ01000012
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
141939
142030
+
Ser
GCT
[ENA]
¡û
>W1610685431
LKTL01000006
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
209137
209225
+
Ser
GCT
[ENA]
¡û
>W1611032782
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
326706
326615
-
Ser
GCT
[ENA]
¡û
>W1611032786
LZFV01000002
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
326291
326200
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK