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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129238 (62 seq.)
>W1710894075
LNFJ01000046
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
13836
13913
+
Val
TAC
[ENA]
¡û
>W1711510299
MLAV01000036
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
46830
46907
+
Val
TAC
[ENA]
¡û
>W1711510300
MLAV01000036
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
46966
47041
+
Val
TAC
[ENA]
¡û
>C171030760
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
199167
199090
-
Val
TAC
-
¡û
>WENV181402253
OFTY01000335
[OFTY] sludge metagenome; sludge
37865
37940
+
Val
TAC
[ENA]
¢þ
>WENV181402254
OFTY01000335
[OFTY] sludge metagenome; sludge
38804
38879
+
Val
TAC
[ENA]
¢þ
>WENV181854209
OGWJ01027008
[OGWJ] freshwater metagenome; freshwater
324
249
-
Val
TAC
[ENA]
¢þ
>W09108618
ABTK01000002
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
1088142
1088067
-
Val
TAC
[ENA]
¡û
>W09108619
ABTK01000002
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
1088037
1087960
-
Val
TAC
[ENA]
¡û
>W09108620
ABTK01000002
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
1087864
1087789
-
Val
TAC
[ENA]
¡û
>WENV170983779
MWVV01088645
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
341
264
-
Val
TAC
[ENA]
¢þ
>WENV170984327
MWVV01238832
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
308
383
+
Val
TAC
[ENA]
¢þ
>WENV170984724
MWVV01406579
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
218
143
-
Val
TAC
[ENA]
¢þ
>WENV170988690
MWVY01000063
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
19357
19282
-
Val
TAC
[ENA]
¢þ
>WENV170988857
MWVY01016825
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
344
421
+
Val
TAC
[ENA]
¢þ
>WENV170994528
MWWE01003435
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1061
984
-
Val
TAC
[ENA]
¢þ
>WENV170994603
MWWE01014438
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
960
1037
+
Val
TAC
[ENA]
¢þ
>WENV170994643
MWWE01021170
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
457
534
+
Val
TAC
[ENA]
¢þ
>WENV170994767
MWWE01044989
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
453
376
-
Val
TAC
[ENA]
¢þ
>WENV170994876
MWWE01076292
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
287
210
-
Val
TAC
[ENA]
¢þ
>WENV170995328
MWWF01000918
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
4893
4970
+
Val
TAC
[ENA]
¢þ
>WENV170995339
MWWF01001301
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
316
241
-
Val
TAC
[ENA]
¢þ
>WENV170995636
MWWF01030605
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
822
899
+
Val
TAC
[ENA]
¢þ
>WENV170995723
MWWF01043726
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
574
497
-
Val
TAC
[ENA]
¢þ
>WENV170995776
MWWF01056389
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
676
751
+
Val
TAC
[ENA]
¢þ
>W1810400822
PYGK01000004
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
93080
93005
-
Val
TAC
[ENA]
¡û
>W1810400823
PYGK01000004
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
92973
92898
-
Val
TAC
[ENA]
¡û
>W1810586496
QFFK01000003
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
504752
504827
+
Val
TAC
[ENA]
¡û
>W1810586497
QFFK01000003
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
507762
507837
+
Val
TAC
[ENA]
¡û
>W1810608373
QGTG01000013
Bacteroidota
Chitinophaga sp. S165 [QGTG]
68855
68780
-
Val
TAC
[ENA]
¡û
>W1810608374
QGTG01000013
Bacteroidota
Chitinophaga sp. S165 [QGTG]
68748
68673
-
Val
TAC
[ENA]
¡û
>W1810692103
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4614561
4614484
-
Val
TAC
[ENA]
¡û
>W1810693542
QLLL01000010
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
63931
64006
+
Val
TAC
[ENA]
¡û
>W1810693543
QLLL01000010
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
64034
64109
+
Val
TAC
[ENA]
¡û
>W1810693544
QLLL01000010
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
64600
64675
+
Val
TAC
[ENA]
¡û
>W1810694452
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
288441
288516
+
Val
TAC
[ENA]
¡û
>W1810858544
QTJV01000010
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
110576
110500
-
Val
TAC
[ENA]
¡û
>W1810858545
QTJV01000010
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
110467
110392
-
Val
TAC
[ENA]
¡û
>SRA1014994
SRR023845.416432
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
219
+
Val
TAC
[SRA]
>C151016368
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1266041
1266118
+
Val
TAC
[Ensembl]
¡û
>C10103743
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
8252572
8252647
+
Val
TAC
[Ensembl]
¡û
>C10103744
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
8252677
8252754
+
Val
TAC
[Ensembl]
¡û
>C10103745
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
8252850
8252925
+
Val
TAC
[Ensembl]
¡û
>C10111777
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7825528
7825451
-
Val
TAC
[Ensembl]
¡û
>W1610617810
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
12180
12103
-
Val
TAC
[ENA]
¡û
>W1610617811
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
11152
11075
-
Val
TAC
[ENA]
¡û
>W1610754341
LNFJ01000046
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
13836
13913
+
Val
TAC
[ENA]
¡û
>W1710515135
FNBN01000005
Bacteroidota
Chitinophaga filiformis [FNBN]
386980
386905
-
Val
TAC
[ENA]
¡û
>W1710515136
FNBN01000005
Bacteroidota
Chitinophaga filiformis [FNBN]
386873
386796
-
Val
TAC
[ENA]
¡û
>W1710570119
FOUX01000009
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
144049
144124
+
Val
TAC
[ENA]
¡û
>W1710570120
FOUX01000009
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
144154
144231
+
Val
TAC
[ENA]
¡û
>W1710570121
FOUX01000009
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
144326
144401
+
Val
TAC
[ENA]
¡û
>W1710580000
FPIZ01000008
Bacteroidota
Chitinophaga sancti [FPIZ]
86217
86140
-
Val
TAC
[ENA]
¡û
>W1710580002
FPIZ01000008
Bacteroidota
Chitinophaga sancti [FPIZ]
85999
85922
-
Val
TAC
[ENA]
¡û
>W1710591005
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239716
239641
-
Val
TAC
[ENA]
¡û
>W1710591006
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239612
239535
-
Val
TAC
[ENA]
¡û
>W1710591007
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239508
239433
-
Val
TAC
[ENA]
¡û
>W1710591008
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239371
239296
-
Val
TAC
[ENA]
¡û
>W1710592492
FRCN01000001
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
194213
194288
+
Val
TAC
[ENA]
¡û
>W1710592493
FRCN01000001
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
194321
194396
+
Val
TAC
[ENA]
¡û
>W1710743863
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
12180
12103
-
Val
TAC
[ENA]
¡û
>W1710743864
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
11152
11075
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK