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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129268 (71 seq.)
>A171001128
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2215711
2215785
+
Val
GAC
-
¡û
>A171003486
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3726438
3726364
-
Val
GAC
-
¡û
>A171004402
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1673430
1673505
+
Val
GAC
-
¡û
>A171006160
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1673521
1673596
+
Val
GAC
-
¡û
>A171006206
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2429018
2429093
+
Val
GAC
-
¡û
>A171006207
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2429138
2429213
+
Val
GAC
-
¡û
>A171006955
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1274513
1274587
+
Val
GAC
-
¡û
>A171007028
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
142797
142723
-
Val
GAC
-
¡û
>WENV180273597
OBEU01000330
[OBEU] marine metagenome; marine
1251
1176
-
Val
GAC
[ENA]
¢þ
>WENV180318170
OBKM01000023
[OBKM] metagenome; water
5792
5867
+
Val
GAC
[ENA]
¢þ
>WENV180318202
OBKM01000077
[OBKM] metagenome; water
39310
39384
+
Val
GAC
[ENA]
¢þ
>WENV180318292
OBKM01000308
[OBKM] metagenome; water
12034
11959
-
Val
GAC
[ENA]
¢þ
>WENV180318332
OBKM01000423
[OBKM] metagenome; water
13902
13828
-
Val
GAC
[ENA]
¢þ
>WENV180318637
OBKM01003320
[OBKM] metagenome; water
4850
4775
-
Val
GAC
[ENA]
¢þ
>WENV170009203
APHM01021665
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
5459
5382
-
Val
GAC
[ENA]
¢þ
>WENV170009226
APHM01021774
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4317
4243
-
Val
GAC
[ENA]
¢þ
>WENV170660008
JXWS01084533
[JXWS] soil metagenome; rice field; elevated CO2
912
986
+
Val
GAC
[ENA]
¢þ
>WENV170679644
LFCJ01000079
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
38083
38158
+
Val
GAC
[ENA]
¢þ
>WENV170679726
LFCJ01000206
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18093
18170
+
Val
GAC
[ENA]
¢þ
>WENV170679727
LFCJ01000211
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
24064
24138
+
Val
GAC
[ENA]
¢þ
>WENV170679765
LFCJ01000332
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
167
241
+
Val
GAC
[ENA]
¢þ
>WENV170679777
LFCJ01000431
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1996
2073
+
Val
GAC
[ENA]
¢þ
>WENV170679788
LFCJ01000479
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
13537
13460
-
Val
GAC
[ENA]
¢þ
>WENV170680022
LFCJ01002809
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
80
6
-
Val
GAC
[ENA]
¢þ
>WENV170680097
LFCJ01004047
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3345
3422
+
Val
GAC
[ENA]
¢þ
>WENV170681143
LFFM01000119
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
28598
28673
+
Val
GAC
[ENA]
¢þ
>WENV170681517
LFFM01001186
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2440
2365
-
Val
GAC
[ENA]
¢þ
>WENV170682237
LFFM01007815
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5673
5599
-
Val
GAC
[ENA]
¢þ
>WENV170682311
LFFM01008882
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
120
45
-
Val
GAC
[ENA]
¢þ
>WENV170701891
LKMJ01000076
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18166
18091
-
Val
GAC
[ENA]
¢þ
>WENV170702151
LKMJ01000686
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3996
3921
-
Val
GAC
[ENA]
¢þ
>WENV170702322
LKMJ01001270
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
47
122
+
Val
GAC
[ENA]
¢þ
>WENV170702466
LKMJ01002104
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13568
13493
-
Val
GAC
[ENA]
¢þ
>WENV170703312
LKMJ01009295
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4039
3964
-
Val
GAC
[ENA]
¢þ
>W1910229571
FNYR01000007
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
79346
79272
-
Val
GAC
[ENA]
¡û
>W1910229739
FODV01000001
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
486231
486156
-
Val
GAC
[ENA]
¡û
>W1910229740
FODV01000001
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
486115
486041
-
Val
GAC
[ENA]
¡û
>W1910230467
FOTC01000001
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
769160
769235
+
Val
GAC
[ENA]
¡û
>W1910230468
FOTC01000001
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
769274
769349
+
Val
GAC
[ENA]
¡û
>W1911493166
OBEJ01000005
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
47102
47027
-
Val
GAC
[ENA]
¡û
>W1911580792
PEND01000001
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
529936
530011
+
Val
GAC
[ENA]
¡û
>W1911629986
PSYW01000002
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
431548
431474
-
Val
GAC
[ENA]
¡û
>W1911682342
QKNY01000005
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
92524
92449
-
Val
GAC
[ENA]
¡û
>W1911696470
QMDW01000010
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
4828
4753
-
Val
GAC
[ENA]
¡û
>W1911709565
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
428208
428133
-
Val
GAC
[ENA]
¡û
>W1911709566
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
428088
428013
-
Val
GAC
[ENA]
¡û
>W1911717786
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
549542
549617
+
Val
GAC
[ENA]
¡û
>W1610001055
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
668250
668173
-
Val
GAC
[ENA]
¡û
>W1610003604
AGCX01000244
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
31281
31204
-
Val
GAC
[ENA]
¡û
>W1610004072
AGFZ01000119
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
62889
62812
-
Val
GAC
[ENA]
¡û
>W1610005903
ALJD01000008
Euryarchaeota
Halogranum salarium B-1 [ALJD]
251318
251243
-
Val
GAC
[ENA]
¡û
>W1610005904
ALJD01000008
Euryarchaeota
Halogranum salarium B-1 [ALJD]
251204
251127
-
Val
GAC
[ENA]
¡û
>W1610011498
ANPG01000044
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
14
89
+
Val
GAC
[ENA]
¡û
>W1610011803
AOHU01000044
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
130808
130883
+
Val
GAC
[ENA]
¡û
>W1610011804
AOHU01000044
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
130928
131003
+
Val
GAC
[ENA]
¡û
>W1610012061
AOIA01000017
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
15039
15113
+
Val
GAC
[ENA]
¡û
>W1610012527
AOIN01000070
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
1047
970
-
Val
GAC
[ENA]
¡û
>W1610013568
AOLF01000022
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
164875
164950
+
Val
GAC
[ENA]
¡û
>W1610013569
AOLF01000022
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
164995
165069
+
Val
GAC
[ENA]
¡û
>W1610013636
AOLG01000047
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
361958
361883
-
Val
GAC
[ENA]
¡û
>W1610013637
AOLG01000047
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
361838
361761
-
Val
GAC
[ENA]
¡û
>W1610013661
AOLH01000008
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
72272
72197
-
Val
GAC
[ENA]
¡û
>W1610013662
AOLH01000008
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
72152
72077
-
Val
GAC
[ENA]
¡û
>W1610013893
AOLL01000029
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
161243
161318
+
Val
GAC
[ENA]
¡û
>W1610013895
AOLL01000030
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
13
88
+
Val
GAC
[ENA]
¡û
>W1610019224
ARQA01000329
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
2433
2507
+
Val
GAC
[ENA]
¡û
>W1610083035
CBMB010000006
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
33117
33191
+
Val
GAC
[ENA]
¡û
>W1610682157
LKML01000006
Euryarchaeota
Haloferacaceae archaeon B1-Br10_E2g22 [LKML]
38083
38158
+
Val
GAC
[ENA]
¡û
>W1610682186
LKMM01000001
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
18093
18170
+
Val
GAC
[ENA]
¡û
>W1610682588
LKND01000086
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
6926
6852
-
Val
GAC
[ENA]
¡û
>W1610799803
LOPU01000029
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
585034
585111
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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