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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129295 (95 seq.)
>W1710872949
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
169111
169188
+
Pro
GGG
[ENA]
¡û
>W1710872996
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
41134
41211
+
Pro
GGG
[ENA]
¡û
>W1710873691
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
502304
502381
+
Pro
GGG
[ENA]
¡û
>W1710873912
LMNE01000002
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
89358
89281
-
Pro
GGG
[ENA]
¡û
>W1710874152
LMNJ01000012
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
329151
329074
-
Pro
GGG
[ENA]
¡û
>W1710874252
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
444813
444890
+
Pro
GGG
[ENA]
¡û
>W1710874643
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
54724
54801
+
Pro
GGG
[ENA]
¡û
>W1710879210
LMRM01000056
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
124538
124615
+
Pro
GGG
[ENA]
¡û
>W1711073397
LSIM01000240
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
30996
31073
+
Pro
GGG
[ENA]
¡û
>W1711073445
LSIN01000362
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
10649
10726
+
Pro
GGG
[ENA]
¡û
>W1711073788
LSIX01000924
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
4776
4699
-
Pro
GGG
[ENA]
¡û
>W1711179448
LWHQ01000058
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59325
59402
+
Pro
GGG
[ENA]
¡û
>W1711262676
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
135177
135100
-
Pro
GGG
[ENA]
¡û
>W1711501131
MKRG01000030
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
54837
54760
-
Pro
GGG
[ENA]
¡û
>W1711502232
MKSM01000007
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
16519
16442
-
Pro
GGG
[ENA]
¡û
>W1711504263
MKUJ01000017
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
178975
179052
+
Pro
GGG
[ENA]
¡û
>W1711505925
MKVY01000038
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
561713
561790
+
Pro
GGG
[ENA]
¡û
>W1711795364
MWPQ01000031
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
31841
31918
+
Pro
GGG
[ENA]
¡û
>W131166479
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
912176
912253
+
Pro
GGG
[ENA]
¡û
>W131175705
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1313837
1313760
-
Pro
GGG
[ENA]
¡û
>C014925
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
1792083
1792160
+
Pro
GGG
[Ensembl]
¡û
>C015358
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
1533855
1533932
+
Pro
GGG
[Ensembl]
¡û
>C018867
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
3181489
3181412
-
Pro
GGG
[Ensembl]
¡û
>w015405
AAPC01000004
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
207558
207479
-
Pro
GGG
[ENA]
¡û
>w013001
AAMY01000017
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
60700
60621
-
Pro
GGG
[ENA]
¡û
>W141007444
AGWX01000003
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
294158
294081
-
Pro
GGG
[ENA]
¡û
>W141007482
AGWY01000006
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
111252
111329
+
Pro
GGG
[ENA]
¡û
>WENV180396571
OBPV01021440
[OBPV] marine metagenome; ENVO:00002010
554
477
-
Pro
GGG
[ENA]
¢þ
>W141063396
APHQ01000009
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
405221
405298
+
Pro
GGG
[ENA]
¡û
>W141063702
APJE01000006
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
76117
76040
-
Pro
GGG
[ENA]
¡û
>W141063759
APJF01000008
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
53693
53770
+
Pro
GGG
[ENA]
¡û
>W141063815
APJG01000020
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
53668
53745
+
Pro
GGG
[ENA]
¡û
>W141063861
APJH01000020
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
76117
76040
-
Pro
GGG
[ENA]
¡û
>W141063884
APJI01000005
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
136959
137036
+
Pro
GGG
[ENA]
¡û
>WENV180690617
OCZS010014624
[OCZS] soil metagenome; soil
2246
2323
+
Pro
GGG
[ENA]
¢þ
>W141093618
AVBK01000027
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
26445
26368
-
Pro
GGG
[ENA]
¡û
>W141093670
AVBL01000034
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
26443
26366
-
Pro
GGG
[ENA]
¡û
>W141093673
AVBM01000001
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
26443
26366
-
Pro
GGG
[ENA]
¡û
>WENV181307835
OFIS01000003
[OFIS] sludge metagenome; sludge
75263
75340
+
Pro
GGG
[ENA]
¢þ
>WENV181311479
OFJB01002740
[OFJB] sludge metagenome; sludge
6013
6090
+
Pro
GGG
[ENA]
¢þ
>WENV181402160
OFTY01000167
[OFTY] sludge metagenome; sludge
32338
32261
-
Pro
GGG
[ENA]
¢þ
>C08011454
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4865618
4865695
+
Pro
GGG
[Ensembl]
¡û
>W141241668
CAHM01000006
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
23625
23702
+
Pro
GGG
[ENA]
¡û
>W141243593
CAJQ02000010
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
156304
156227
-
Pro
GGG
[ENA]
¡û
>WENV170122105
CENN01046985
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
494
417
-
Pro
GGG
[ENA]
¢þ
>WENV170132579
CENT01085865
[CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
145
222
+
Pro
GGG
[ENA]
¢þ
>WENV170707201
LNAP01015056
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5230
5153
-
Pro
GGG
[ENA]
¢þ
>WENV170974844
MTKY01077174
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2557
2480
-
Pro
GGG
[ENA]
¢þ
>C181020332
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
328551
328474
-
Pro
GGG
-
¡û
>C181179104
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
2049894
2049971
+
Pro
GGG
-
¡û
>C181180016
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
873246
873169
-
Pro
GGG
-
¡û
>C181180030
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
1915498
1915575
+
Pro
GGG
-
¡û
>C181180129
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
5481549
5481472
-
Pro
GGG
-
¡û
>W09103002
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
1048844
1048767
-
Pro
GGG
[ENA]
¡û
>W09103865
AALA01000006
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
65822
65745
-
Pro
GGG
[ENA]
¡û
>W141730065
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
4642761
4642838
+
Pro
GGG
[ENA]
¡û
>W141810203
JPUG01000066
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
68113
68036
-
Pro
GGG
[ENA]
¡û
>W1910182837
BJNF01000030
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
13237
13160
-
Pro
GGG
[ENA]
¡û
>W1911653556
QDGA01000003
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
31786
31709
-
Pro
GGG
[ENA]
¡û
>W1911708573
QOWC01000119
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
995
1072
+
Pro
GGG
[ENA]
¡û
>W1810057215
PDHT01000027
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
2392
2315
-
Pro
GGG
[ENA]
¡û
>W1810079896
PELK01001541
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
6577
6654
+
Pro
GGG
[ENA]
¡û
>W1810325515
PUEJ01000010
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
258943
259020
+
Pro
GGG
[ENA]
¡û
>W1810487224
QAYK01000015
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
41498
41575
+
Pro
GGG
[ENA]
¡û
>W1810672720
QJTP01000015
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
41498
41575
+
Pro
GGG
[ENA]
¡û
>W1810706678
QMKH01000004
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
241745
241668
-
Pro
GGG
[ENA]
¡û
>W1810735514
QOIO01000043
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
49486
49563
+
Pro
GGG
[ENA]
¡û
>W1810783325
QQTO01000033
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
205087
205010
-
Pro
GGG
[ENA]
¡û
>W1810783346
QQTP01000006
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
111522
111599
+
Pro
GGG
[ENA]
¡û
>W1510081376
CDSD01000110
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
5291
5214
-
Pro
GGG
[ENA]
¡û
>W1511400936
JTHG01000066
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
688
765
+
Pro
GGG
[ENA]
¡û
>W1511507860
JXOD01000025
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
1652
1575
-
Pro
GGG
[ENA]
¡û
>W1511563264
LABX01000243
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
17725
17648
-
Pro
GGG
[ENA]
¡û
>W1511563325
LABY01000197
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
3995
3918
-
Pro
GGG
[ENA]
¡û
>W1511591977
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
541872
541949
+
Pro
GGG
[ENA]
¡û
>W11168457
AFOF01000030
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
32991
33068
+
Pro
GGG
[ENA]
¡û
>C161001193
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1036100
1036023
-
Pro
GGG
[Ensembl]
¡û
>W121068019
AJUA01000052
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
127158
127081
-
Pro
GGG
[ENA]
¡û
>W1610735295
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
169111
169188
+
Pro
GGG
[ENA]
¡û
>W1610735342
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
41134
41211
+
Pro
GGG
[ENA]
¡û
>W1610736037
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
502304
502381
+
Pro
GGG
[ENA]
¡û
>W1610736258
LMNE01000002
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
89358
89281
-
Pro
GGG
[ENA]
¡û
>W1610736498
LMNJ01000012
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
329151
329074
-
Pro
GGG
[ENA]
¡û
>W1610736598
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
444813
444890
+
Pro
GGG
[ENA]
¡û
>W1610736989
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
54724
54801
+
Pro
GGG
[ENA]
¡û
>W1610741556
LMRM01000056
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
124538
124615
+
Pro
GGG
[ENA]
¡û
>W1610912702
LSIM01000240
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
30996
31073
+
Pro
GGG
[ENA]
¡û
>W1610912750
LSIN01000362
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
10649
10726
+
Pro
GGG
[ENA]
¡û
>W1610913093
LSIX01000924
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
4776
4699
-
Pro
GGG
[ENA]
¡û
>W1610987349
LWHQ01000058
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59325
59402
+
Pro
GGG
[ENA]
¡û
>W1611024543
LYXZ01000056
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
135177
135100
-
Pro
GGG
[ENA]
¡û
>W1710505292
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
1031046
1030969
-
Pro
GGG
[ENA]
¡û
>W1710507576
FMVJ01000006
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
98501
98424
-
Pro
GGG
[ENA]
¡û
>W1710548838
FOEB01000016
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
1871
1948
+
Pro
GGG
[ENA]
¡û
>W1710579033
FPCB01000005
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
71346
71269
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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