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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129313 (14 seq.)
>A171000100
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1163866
1163941
+
Arg
TCT
-
¡û
>A171000910
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1540833
1540908
+
Arg
TCT
-
¡û
>A171000932
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2680159
2680234
+
Arg
TCT
-
¡û
>A171007712
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1551241
1551316
+
Arg
TCT
-
¡û
>At1663
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1181056
1181130
+
Arg
TCT
[Ensembl]
¡û
>WENV170675917
LDZQ01001311
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1276
1199
-
Arg
TCT
[ENA]
¢þ
>WENV170675918
LDZQ01001311
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1169
1095
-
Arg
CCT
[ENA]
¢þ
>WENV170676698
LDZS01001968
[LDZS] terrestrial metagenome; oil reservoir sample K3
3845
3768
-
Arg
TCT
[ENA]
¢þ
>W1910226658
FMXB01000015
Euryarchaeota
Methanobrevibacter millerae DSM 16643 [FMXB]
43253
43327
+
Arg
TCT
[ENA]
¡û
>W1911690439
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
184196
184271
+
Arg
TCT
[ENA]
¡û
>W1911690440
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
184300
184374
+
Arg
CCT
[ENA]
¡û
>W1911722802
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
73690
73615
-
Arg
TCT
[ENA]
¡û
>W1610612496
LGEU01000125
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
1276
1199
-
Arg
TCT
[ENA]
¡û
>W1610612497
LGEU01000125
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
1169
1095
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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