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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129541 (44 seq.)
>W1710995848
LQAQ01000109
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
15007
15084
+
Val
TAC
[ENA]
¡û
>W1710995850
LQAQ01000109
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
15203
15280
+
Val
TAC
[ENA]
¡û
>W1710995852
LQAQ01000110
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
163
240
+
Val
TAC
[ENA]
¡û
>W1710995853
LQAQ01000111
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
57
132
+
Val
TAC
[ENA]
¡û
>W1711167070
LVWA01000004
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
165421
165498
+
Val
TAC
[ENA]
¡û
>W131167791
ARDO01000001
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
408251
408174
-
Val
TAC
[ENA]
¡û
>WENV180014312
FPIC01161273
[FPIC] soil metagenome; Soil
78
3
-
Val
TAC
[ENA]
¢þ
>W141151926
AXBK01000005
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
331888
331963
+
Val
TAC
[ENA]
¡û
>W141152207
AXBP01000019
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
426122
426045
-
Val
TAC
[ENA]
¡û
>W141152208
AXBP01000019
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
425907
425832
-
Val
TAC
[ENA]
¡û
>WENV170993499
MWWB01329131
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
161
86
-
Val
TAC
[ENA]
¢þ
>C191018702
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4139137
4139062
-
Val
TAC
-
¡û
>C191018703
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4138922
4138847
-
Val
TAC
-
¡û
>C191127497
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
2496423
2496348
-
Val
TAC
-
¡û
>W1910548615
FZOQ01000012
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
23646
23571
-
Val
TAC
[ENA]
¡û
>W1910548616
FZOQ01000012
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
23478
23403
-
Val
TAC
[ENA]
¡û
>W1810173078
PJMU01000002
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
919818
919893
+
Val
TAC
[ENA]
¡û
>W1810368062
PVZE01000012
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
170447
170522
+
Val
TAC
[ENA]
¡û
>W1810368063
PVZE01000012
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
170615
170690
+
Val
TAC
[ENA]
¡û
>W1810400085
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
209642
209566
-
Val
TAC
[ENA]
¡û
>W1810483260
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
1098177
1098252
+
Val
TAC
[ENA]
¡û
>W1810503686
QBKI01000001
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
160260
160335
+
Val
TAC
[ENA]
¡û
>W1810533375
QCZK01000003
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
339176
339251
+
Val
TAC
[ENA]
¡û
>W1810533376
QCZK01000003
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
339416
339491
+
Val
TAC
[ENA]
¡û
>W1810572886
QEKI01000018
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
53300
53225
-
Val
TAC
[ENA]
¡û
>W1810789504
QRGR01000020
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
25797
25722
-
Val
TAC
[ENA]
¡û
>C151056015
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1618698
1618621
-
Val
TAC
[Ensembl]
¡û
>C151056016
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1618350
1618273
-
Val
TAC
[Ensembl]
¡û
>W1511359579
JRYR01000006
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
410243
410320
+
Val
TAC
[ENA]
¡û
>W1511359581
JRYR01000006
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
410434
410511
+
Val
TAC
[ENA]
¡û
>W1511359583
JRYR01000006
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
410624
410701
+
Val
TAC
[ENA]
¡û
>W1511393418
JTAM01000049
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
3666
3743
+
Val
TAC
[ENA]
¡û
>W1511393420
JTAM01000049
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
3864
3941
+
Val
TAC
[ENA]
¡û
>C161002958
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
2023107
2023030
-
Val
TAC
[Ensembl]
¡û
>C161077004
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
2122792
2122715
-
Val
TAC
-
¡û
>W121084772
AKIS01000055
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
6235
6312
+
Val
TAC
[ENA]
¡û
>W1610850505
LQAQ01000109
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
15007
15084
+
Val
TAC
[ENA]
¡û
>W1610850507
LQAQ01000109
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
15203
15280
+
Val
TAC
[ENA]
¡û
>W1610850509
LQAQ01000110
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
163
240
+
Val
TAC
[ENA]
¡û
>W1610850510
LQAQ01000111
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
57
132
+
Val
TAC
[ENA]
¡û
>W1710562158
FOOT01000003
Bacteroidota
Pontibacter chinhatensis [FOOT]
166461
166538
+
Val
TAC
[ENA]
¡û
>W1710579000
FPCA01000002
Bacteroidota
Pontibacter akesuensis [FPCA]
175410
175487
+
Val
TAC
[ENA]
¡û
>W1710597863
FTNM01000001
Bacteroidota
Pontibacter lucknowensis [FTNM]
987592
987669
+
Val
TAC
[ENA]
¡û
>W1710600027
FTPP01000002
Bacteroidota
Pontibacter indicus [FTPP]
418186
418109
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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