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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129548 (47 seq.)
>A171001468
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
802596
802521
-
Glu
TTC
-
¡û
>A171002776
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
253645
253569
-
Glu
TTC
-
¡û
>A171006554
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1756660
1756584
-
Glu
TTC
-
¡û
>A171006802
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1903501
1903576
+
Glu
TTC
-
¡û
>WENV180003570
FLNZ01005941
[FLNZ] bioreactor metagenome; Moose rumen
1545
1469
-
Glu
TTC
[ENA]
¢þ
>WENV180220927
OBAX01000250
[OBAX] human gut metagenome; human gut
397
473
+
Glu
TTC
[ENA]
¢þ
>WENV180246467
OBDP01000160
[OBDP] human gut metagenome; human gut
10449
10373
-
Glu
TTC
[ENA]
¢þ
>WENV180246470
OBDP01000160
[OBDP] human gut metagenome; human gut
10029
9953
-
Glu
TTC
[ENA]
¢þ
>WENV180545348
OCIT01002201
[OCIT] human gut metagenome; human gut
307
383
+
Glu
TTC
[ENA]
¢þ
>WENV180545351
OCIT01002201
[OCIT] human gut metagenome; human gut
727
803
+
Glu
TTC
[ENA]
¢þ
>WENV180657040
OCVV010623736
[OCVV] gut metagenome; gut
377
301
-
Glu
TTC
[ENA]
¢þ
>WENV180657044
OCVV010623736
[OCVV] gut metagenome; gut
377
301
-
Glu
TTC
[ENA]
¢þ
>WENV180660900
OCVV010973049
[OCVV] gut metagenome; gut
7026
6950
-
Glu
TTC
[ENA]
¢þ
>WENV180660902
OCVV010973049
[OCVV] gut metagenome; gut
7026
6950
-
Glu
TTC
[ENA]
¢þ
>WENV180661007
OCVV010980698
[OCVV] gut metagenome; gut
4490
4566
+
Glu
TTC
[ENA]
¢þ
>WENV180661012
OCVV010980698
[OCVV] gut metagenome; gut
4490
4566
+
Glu
TTC
[ENA]
¢þ
>WENV180672460
OCVV011327437
[OCVV] gut metagenome; gut
121
197
+
Glu
TTC
[ENA]
¢þ
>WENV180672462
OCVV011327437
[OCVV] gut metagenome; gut
121
197
+
Glu
TTC
[ENA]
¢þ
>WENV180675928
OCVV011360788
[OCVV] gut metagenome; gut
383
307
-
Glu
TTC
[ENA]
¢þ
>WENV180675932
OCVV011360788
[OCVV] gut metagenome; gut
383
307
-
Glu
TTC
[ENA]
¢þ
>WENV180871526
ODLN01090409
[ODLN] human metagenome; G_DNA_Stool
314
238
-
Glu
TTC
[ENA]
¢þ
>At1559
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
337144
337218
+
Glu
TTC
[Ensembl]
¡û
>At1562
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
337564
337638
+
Glu
TTC
[Ensembl]
¡û
>W1910228312
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
287077
287152
+
Glu
TTC
[ENA]
¡û
>W1910471789
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
191330
191407
+
Glu
TTC
[ENA]
¡û
>W1910576024
JRWK01000005
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
64168
64092
-
Glu
TTC
[ENA]
¡û
>W1910576027
JRWK01000005
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
63748
63672
-
Glu
TTC
[ENA]
¡û
>W1910582957
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
191254
191331
+
Glu
TTC
[ENA]
¡û
>W1910635185
LMVN01000029
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
56552
56476
-
Glu
TTC
[ENA]
¡û
>W1910635188
LMVN01000029
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
56069
55993
-
Glu
TTC
[ENA]
¡û
>W1910646608
LWMS01000002
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
48371
48295
-
Glu
TTC
[ENA]
¡û
>W1910646611
LWMS01000002
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
47888
47812
-
Glu
TTC
[ENA]
¡û
>W1910656115
MAIF01000012
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
6776
6700
-
Glu
TTC
[ENA]
¡û
>W1910656118
MAIF01000012
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
6356
6280
-
Glu
TTC
[ENA]
¡û
>W1910661876
MBKP01000047
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
6180
6103
-
Glu
TTC
[ENA]
¡û
>W1910672554
MCNQ01000010
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
91092
91169
+
Glu
TTC
[ENA]
¡û
>W1910899141
NGJK01000015
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
45669
45745
+
Glu
TTC
[ENA]
¡û
>W1910899144
NGJK01000015
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
46089
46165
+
Glu
TTC
[ENA]
¡û
>W1911492112
OBDR01000001
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
124241
124318
+
Glu
TTC
[ENA]
¡û
>W1911581821
PGGK01000005
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
45314
45237
-
Glu
TTC
[ENA]
¡û
>W1911633750
PVBU01000001
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
234274
234197
-
Glu
TTC
[ENA]
¡û
>W1911653192
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
175896
175973
+
Glu
TTC
[ENA]
¡û
>W1610046892
BBCW01000022
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
34093
34170
+
Glu
TTC
[ENA]
¡û
>W1610046893
BBCW01000022
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
34536
34613
+
Glu
TTC
[ENA]
¡û
>W1610919855
LSRU01000013
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
22067
22143
+
Glu
TTC
[ENA]
¡û
>W1610919917
LSRV01000065
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
2072
1995
-
Glu
TTC
[ENA]
¡û
>W1611052497
MAFX01000015
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
908
831
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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