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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129717 (25 seq.)
>W1710806112
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
117644
117721
+
Glu
TTC
[ENA]
¡û
>W1710806113
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
129234
129311
+
Glu
TTC
[ENA]
¡û
>W1711411766
MGTN01000066
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
5117
5194
+
Glu
TTC
[ENA]
¡û
>WENV180043579
LQAI01001073
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
242
165
-
Glu
TTC
[ENA]
¢þ
>WENV180044026
LQAJ01000364
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
7305
7228
-
Glu
TTC
[ENA]
¢þ
>WENV180044027
LQAJ01000364
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3096
3019
-
Glu
TTC
[ENA]
¢þ
>WENV183513824
OMKS01008317
[OMKS] sediment metagenome; hot spring sediment
6437
6360
-
Glu
TTC
[ENA]
¢þ
>WENV183706374
PDWI01003969
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29508
29585
+
Glu
TTC
[ENA]
¢þ
>WENV183709224
PDWI01025611
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7799
7876
+
Glu
TTC
[ENA]
¢þ
>WENV183746872
PPCM01000028
[PPCM] marine sediment metagenome; marine sediment
280968
281045
+
Glu
TTC
[ENA]
¢þ
>WENV183746873
PPCM01000028
[PPCM] marine sediment metagenome; marine sediment
281194
281271
+
Glu
TTC
[ENA]
¢þ
>WENV170000032
AERA01002075
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
330
407
+
Glu
TTC
[ENA]
¢þ
>C181226997
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3189510
3189433
-
Glu
TTC
-
¡û
>C181226998
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3189301
3189224
-
Glu
TTC
-
¡û
>W1910547855
FZOC01000008
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
139338
139415
+
Glu
TTC
[ENA]
¡û
>W1911737995
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
369248
369325
+
Glu
TTC
[ENA]
¡û
>W1911737996
QTZO01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
375707
375784
+
Glu
TTC
[ENA]
¡û
>WENV11100390
AERA01002075
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
330
407
+
Glu
TTC
[ENA]
¡û
>W1511534109
JYNP01000026
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
9324
9401
+
Glu
TTC
[ENA]
¡û
>W11149122
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
642387
642464
+
Glu
TTC
[ENA]
¡û
>W11149123
AEUJ01000003
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
675686
675763
+
Glu
TTC
[ENA]
¡û
>C161068285
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1440819
1440742
-
Glu
TTC
[Ensembl]
¡û
>C161068286
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
1405742
1405665
-
Glu
TTC
[Ensembl]
¡û
>C131017921
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1394008
1394085
+
Glu
TTC
[Ensembl]
¡û
>C131017920
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1390611
1390688
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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