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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129740 (60 seq.)
>W1712108341
NJBC01000017
Gammaproteobacteria
Raoultella ornithinolytica [NJBC]
993687
993603
-
Tyr
GTA
[ENA]
¡û
>C171001627
CP008886
Gammaproteobacteria
Raoultella ornithinolytica A14 [CP008886]
3060875
3060959
+
Tyr
GTA
-
¡û
>C171067928
CP017802
Gammaproteobacteria
Raoultella ornithinolytica MG [CP017802]
3468649
3468733
+
Tyr
GTA
-
¡û
>WENV182402428
OIES01010452
[OIES] human gut metagenome; human gut
939
1023
+
Tyr
GTA
[ENA]
¢þ
>WENV182601519
OJJJ01000016
[OJJJ] metagenome; faeces
224
140
-
Tyr
GTA
[ENA]
¢þ
>WENV182952514
OKVW01001640
[OKVW] human gut metagenome; human gut
3358
3274
-
Tyr
GTA
[ENA]
¢þ
>C181166495
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
3015638
3015554
-
Tyr
GTA
-
¡û
>C181175816
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
362661
362745
+
Tyr
GTA
-
¡û
>C191100138
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
5227589
5227505
-
Tyr
GTA
-
¡û
>C191100139
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
5227461
5227377
-
Tyr
GTA
-
¡û
>C191109120
CP033683
Gammaproteobacteria
Raoultella ornithinolytica YDC775_2 [CP033683]
3199579
3199663
+
Tyr
GTA
-
¡û
>C191159140
CP038281
Gammaproteobacteria
Raoultella ornithinolytica WLK218 [CP038281]
205554
205638
+
Tyr
GTA
-
¡û
>C191199524
LR134195
Gammaproteobacteria
Raoultella ornithinolytica NCTC13096 [LR134195]
2185452
2185368
-
Tyr
GTA
-
¡û
>C191199645
LR134201
Gammaproteobacteria
Cedecea lapagei NCTC11466 [LR134201]
1991789
1991873
+
Tyr
GTA
-
¡û
>W141710365
JMPI01000024
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
37120
37036
-
Tyr
GTA
[ENA]
¡û
>W141710366
JMPI01000024
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
36985
36901
-
Tyr
GTA
[ENA]
¡û
>W1910147662
BIIO01000002
Gammaproteobacteria
Raoultella ornithinolytica TUM14061 [BIIO]
220641
220557
-
Tyr
GTA
[ENA]
¡û
>W1910179140
BJFN01000004
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
259656
259740
+
Tyr
GTA
[ENA]
¡û
>W1910179141
BJFN01000004
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
259781
259865
+
Tyr
GTA
[ENA]
¡û
>W1910339659
FTLF01000006
Gammaproteobacteria
Raoultella ornithinolytica Marseille-P1025 [FTLF]
468019
467935
-
Tyr
GTA
[ENA]
¡û
>W1910889575
NETI01000033
Gammaproteobacteria
Raoultella ornithinolytica 1810 [NETI]
289
205
-
Tyr
GTA
[ENA]
¡û
>W1910897133
NGAG01000027
Gammaproteobacteria
Raoultella ornithinolytica Ro25687 [NGAG]
118
34
-
Tyr
GTA
[ENA]
¡û
>W1910897190
NGAH01000012
Gammaproteobacteria
Raoultella ornithinolytica Ro25277 [NGAH]
178911
178995
+
Tyr
GTA
[ENA]
¡û
>W1910897265
NGAI01000018
Gammaproteobacteria
Raoultella ornithinolytica Ro24522 [NGAI]
177303
177387
+
Tyr
GTA
[ENA]
¡û
>W1910922573
NIGE01000026
Gammaproteobacteria
Raoultella ornithinolytica RO79 [NIGE]
177159
177243
+
Tyr
GTA
[ENA]
¡û
>W1911492964
OBEF01000014
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
127636
127720
+
Tyr
GTA
[ENA]
¡û
>W1911492965
OBEF01000014
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
127930
128014
+
Tyr
GTA
[ENA]
¡û
>W1911670713
QFTY01000003
Gammaproteobacteria
Raoultella ornithinolytica P079F W [QFTY]
176992
177076
+
Tyr
GTA
[ENA]
¡û
>W1810090960
PGGQ01000022
Gammaproteobacteria
Raoultella ornithinolytica 15-1420 [PGGQ]
54778
54694
-
Tyr
GTA
[ENA]
¡û
>W1810129810
PIBO01000001
Gammaproteobacteria
Raoultella sp. T31 [PIBO]
277261
277177
-
Tyr
GTA
[ENA]
¡û
>W1810185358
PKFT01000008
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
159948
159864
-
Tyr
GTA
[ENA]
¡û
>W1810266211
PQVR01000001
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
155472
155556
+
Tyr
GTA
[ENA]
¡û
>W1810266369
PQVT01000001
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
505833
505917
+
Tyr
GTA
[ENA]
¡û
>W1810266467
PQVU01000002
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
505833
505917
+
Tyr
GTA
[ENA]
¡û
>W1810266564
PQVV01000006
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
155424
155508
+
Tyr
GTA
[ENA]
¡û
>W1810315453
PTXP01000001
Gammaproteobacteria
Raoultella ornithinolytica R23820 [PTXP]
177219
177303
+
Tyr
GTA
[ENA]
¡û
>W1810315551
PTXQ01000004
Gammaproteobacteria
Raoultella ornithinolytica R23804 [PTXQ]
238820
238736
-
Tyr
GTA
[ENA]
¡û
>W1810315627
PTXR01000002
Gammaproteobacteria
Raoultella ornithinolytica R19773 [PTXR]
254907
254823
-
Tyr
GTA
[ENA]
¡û
>W1810315694
PTXS01000001
Gammaproteobacteria
Raoultella ornithinolytica R10648 [PTXS]
354406
354322
-
Tyr
GTA
[ENA]
¡û
>W1810918440
QWIX01000002
Gammaproteobacteria
Raoultella ornithinolytica QDRO1 [QWIX]
177750
177834
+
Tyr
GTA
[ENA]
¡û
>C151051712
CP009458
Gammaproteobacteria
Cedecea neteri M006 [CP009458]
3896823
3896907
+
Tyr
GTA
[Ensembl]
¡û
>C151077737
CP011132
Gammaproteobacteria
Citrobacter amalonaticus Y19 [CP011132]
1829490
1829574
+
Tyr
GTA
[Ensembl]
¡û
>W1511346538
JRHG01000018
Gammaproteobacteria
Cedecea neteri SSMD04 [JRHG]
124125
124041
-
Tyr
GTA
[ENA]
¡û
>W1511517350
JXXF01000228
Gammaproteobacteria
Raoultella ornithinolytica BAL286 [JXXF]
8703
8619
-
Tyr
GTA
[ENA]
¡û
>W1511677397
LFBW01000031
Gammaproteobacteria
Raoultella ornithinolytica CB1 [LFBW]
47345
47261
-
Tyr
GTA
[ENA]
¡û
>C161055539
CP013338
Gammaproteobacteria
Raoultella ornithinolytica Yangling I2 [CP013338]
2243187
2243103
-
Tyr
GTA
-
¡û
>W1610076374
BCYR01000010
Gammaproteobacteria
Raoultella ornithinolytica NBRC 105727 = ATCC 31898 [BCYR]
251150
251234
+
Tyr
GTA
[ENA]
¡û
>C131013259
CP004142
Gammaproteobacteria
Raoultella ornithinolytica B6 [CP004142]
906634
906550
-
Tyr
GTA
[Ensembl]
¡û
>W1610481612
FKZO01000002
Gammaproteobacteria
Raoultella ornithinolytica oxytoca [FKZO]
549153
549069
-
Tyr
GTA
[ENA]
¡û
>W1610994306
LXEO01000013
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
52111
52027
-
Tyr
GTA
[ENA]
¡û
>W1610994307
LXEO01000013
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
51976
51892
-
Tyr
GTA
[ENA]
¡û
>W1610994431
LXEP01000036
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
111370
111286
-
Tyr
GTA
[ENA]
¡û
>W1610994432
LXEP01000036
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
111203
111119
-
Tyr
GTA
[ENA]
¡û
>W1610994490
LXEQ01000052
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
91965
92049
+
Tyr
GTA
[ENA]
¡û
>W1610994491
LXEQ01000052
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
92093
92177
+
Tyr
GTA
[ENA]
¡û
>W1610994522
LXER01000011
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
230661
230577
-
Tyr
GTA
[ENA]
¡û
>W1610994523
LXER01000011
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
230494
230410
-
Tyr
GTA
[ENA]
¡û
>WENV082767
BAAW01000538
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
2569
2483
-
Tyr
GTA
[ENA]
>WENV082917
BAAW01012265
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
220
306
+
Tyr
GTA
[ENA]
>W1710479292
FKZO01000002
Gammaproteobacteria
Raoultella ornithinolytica oxytoca [FKZO]
549153
549069
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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