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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129887 (7 seq.)
>WENV170155397
CEOG01024886
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
130
-
Met
CAT
[ENA]
¢þ
>WENV170311633
CESM01165859
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1381
1458
+
Met
CAT
[ENA]
¢þ
>WENV170611025
FUWD012177307
[FUWD] metagenome; unknown
247
170
-
Met
CAT
[ENA]
¢þ
>WENV170847836
MDTA01068534
[MDTA] marine metagenome; seawater
1500
1423
-
Met
CAT
[ENA]
¢þ
>WENV170913650
MDTE01137437
[MDTE] marine metagenome; seawater
3140
3063
-
Met
CAT
[ENA]
¢þ
>WENV170930721
MDTG01172473
[MDTG] marine metagenome; seawater
1602
1679
+
Met
CAT
[ENA]
¢þ
>WENV170942050
MDTG01371289
[MDTG] marine metagenome; seawater
6288
6211
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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