This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129970 (25 seq.)
>W1711377569
MDZA01000415
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
55288
55365
+
Val
TAC
[ENA]
¡û
>W131215994
ATVL01000011
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
359895
359818
-
Val
TAC
[ENA]
¡û
>WENV180283570
OBID01000765
[OBID] metagenome; sludge
7808
7733
-
Val
TAC
[ENA]
¢þ
>WENV181189932
OEOF01332850
[OEOF] activated sludge metagenome; Activated Sludge
122
197
+
Val
TAC
[ENA]
¢þ
>WENV170554725
CXWK01087272
[CXWK] wastewater metagenome; activated sludge
342
417
+
Val
TAC
[ENA]
¢þ
>WENV170983739
MWVV01080353
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
633
708
+
Val
TAC
[ENA]
¢þ
>WENV170989066
MWVY01078279
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
155
78
-
Val
TAC
[ENA]
¢þ
>W141734731
JNLX01000183
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
15149
15224
+
Val
TAC
[ENA]
¡û
>W1810089903
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
122791
122716
-
Val
TAC
[ENA]
¡û
>W1810089904
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
122695
122619
-
Val
TAC
[ENA]
¡û
>W1810678975
QKNS01000005
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
21863
21788
-
Val
TAC
[ENA]
¡û
>W1810678976
QKNS01000005
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
21763
21688
-
Val
TAC
[ENA]
¡û
>W1810789222
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1137926
1138001
+
Val
TAC
[ENA]
¡û
>SRA1014747
SRR023845.298200
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
78
153
+
Val
TAC
[SRA]
>C151009404
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1816585
1816660
+
Val
TAC
[Ensembl]
¡û
>C151009405
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
1816687
1816762
+
Val
TAC
[Ensembl]
¡û
>C151017365
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4671537
4671612
+
Val
TAC
[Ensembl]
¡û
>C151017366
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4671643
4671720
+
Val
TAC
[Ensembl]
¡û
>C151064014
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
541140
541063
-
Val
TAC
[Ensembl]
¡û
>W1511543301
JZIR01000006
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
15371
15296
-
Val
TAC
[ENA]
¡û
>W1511543302
JZIR01000006
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
15272
15195
-
Val
TAC
[ENA]
¡û
>C161070727
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
4734834
4734759
-
Val
TAC
[Ensembl]
¡û
>C161077103
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
2780418
2780493
+
Val
TAC
[Ensembl]
¡û
>W1710530564
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
51448
51525
+
Val
TAC
[ENA]
¡û
>W1710530565
FNOV01000007
Bacteroidota
Hymenobacter psychrophilus [FNOV]
51547
51624
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK