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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.130479 (135 seq.)
>W1711117603
LUDH01000002
Bacteroidota
Riemerella anatipestifer [LUDH]
290251
290328
+
Val
TAC
[ENA]
¡û
>W1711117641
LUDI01000003
Bacteroidota
Riemerella anatipestifer [LUDI]
21289
21366
+
Val
TAC
[ENA]
¡û
>W1711117987
LUDR01000019
Bacteroidota
Riemerella anatipestifer [LUDR]
21699
21776
+
Val
TAC
[ENA]
¡û
>W1711118038
LUDT01000013
Bacteroidota
Riemerella anatipestifer [LUDT]
23185
23262
+
Val
TAC
[ENA]
¡û
>W1711118081
LUDU01000002
Bacteroidota
Riemerella anatipestifer [LUDU]
291043
291120
+
Val
TAC
[ENA]
¡û
>C171015065
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
1214820
1214743
-
Val
TAC
-
¡û
>W131170825
ARFT01000019
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
6583
6660
+
Val
TAC
[ENA]
¡û
>WENV180296752
OBJA01002326
[OBJA] soil metagenome; sediment, water from around vicinity
10584
10659
+
Val
TAC
[ENA]
¢þ
>WENV180705572
ODEJ01008814
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2168
2243
+
Val
TAC
[ENA]
¢þ
>WENV180707844
ODFJ01000048
[ODFJ] human metagenome; G_DNA_Tongue dorsum
65117
65192
+
Val
TAC
[ENA]
¢þ
>WENV180712855
ODFU01008267
[ODFU] human metagenome; G_DNA_Buccal mucosa
45
120
+
Val
TAC
[ENA]
¢þ
>WENV180718701
ODGG01070171
[ODGG] human metagenome; G_DNA_Buccal mucosa
136
213
+
Val
TAC
[ENA]
¢þ
>WENV180722511
ODGM01001557
[ODGM] human metagenome; G_DNA_Palatine Tonsils
4627
4552
-
Val
TAC
[ENA]
¢þ
>WENV180728513
ODGU01056072
[ODGU] human metagenome; G_DNA_Supragingival plaque
154
229
+
Val
TAC
[ENA]
¢þ
>WENV180733049
ODGY01018573
[ODGY] human metagenome; G_DNA_Supragingival plaque
337
262
-
Val
TAC
[ENA]
¢þ
>WENV180736151
ODHB01006895
[ODHB] human metagenome; G_DNA_Supragingival plaque
1803
1878
+
Val
TAC
[ENA]
¢þ
>WENV180738342
ODHD01000001
[ODHD] human metagenome; G_DNA_Supragingival plaque
138096
138021
-
Val
TAC
[ENA]
¢þ
>WENV180750488
ODHS01002787
[ODHS] human metagenome; G_DNA_Supragingival plaque
645
720
+
Val
TAC
[ENA]
¢þ
>WENV180754690
ODHU01000328
[ODHU] human metagenome; G_DNA_Supragingival plaque
7857
7782
-
Val
TAC
[ENA]
¢þ
>WENV180759030
ODHY01000081
[ODHY] human metagenome; G_DNA_Buccal mucosa
37850
37775
-
Val
TAC
[ENA]
¢þ
>WENV180768037
ODIG01002037
[ODIG] human metagenome; G_DNA_Tongue dorsum
10222
10147
-
Val
TAC
[ENA]
¢þ
>WENV180775438
ODIK01000440
[ODIK] human metagenome; G_DNA_Tongue dorsum
10544
10619
+
Val
TAC
[ENA]
¢þ
>WENV180778589
ODIM01018381
[ODIM] human metagenome; G_DNA_Supragingival plaque
177
102
-
Val
TAC
[ENA]
¢þ
>WENV180779656
ODIN01010729
[ODIN] human metagenome; G_DNA_Throat
207
132
-
Val
TAC
[ENA]
¢þ
>WENV180781630
ODIP01001370
[ODIP] human metagenome; G_DNA_Supragingival plaque
1348
1273
-
Val
TAC
[ENA]
¢þ
>WENV180787460
ODIS01006591
[ODIS] human metagenome; G_DNA_Supragingival plaque
3715
3640
-
Val
TAC
[ENA]
¢þ
>WENV180790028
ODIT01002737
[ODIT] human metagenome; G_DNA_Tongue dorsum
3883
3808
-
Val
TAC
[ENA]
¢þ
>WENV180793165
ODIW01009600
[ODIW] human metagenome; G_DNA_Tongue dorsum
760
685
-
Val
TAC
[ENA]
¢þ
>WENV180794017
ODIY01000159
[ODIY] human metagenome; G_DNA_Buccal mucosa
7083
7008
-
Val
TAC
[ENA]
¢þ
>WENV180797161
ODJB01033521
[ODJB] human metagenome; G_DNA_Supragingival plaque
914
989
+
Val
TAC
[ENA]
¢þ
>WENV180801457
ODJD01034311
[ODJD] human metagenome; G_DNA_Supragingival plaque
260
185
-
Val
TAC
[ENA]
¢þ
>WENV180804584
ODJG01006500
[ODJG] human metagenome; G_DNA_Supragingival plaque
3477
3552
+
Val
TAC
[ENA]
¢þ
>WENV180805659
ODJH01000100
[ODJH] human metagenome; G_DNA_Tongue dorsum
18461
18386
-
Val
TAC
[ENA]
¢þ
>WENV180806854
ODJI01000068
[ODJI] human metagenome; G_DNA_Tongue dorsum
59585
59660
+
Val
TAC
[ENA]
¢þ
>WENV180813594
ODJO01001317
[ODJO] human metagenome; G_DNA_Supragingival plaque
7028
6953
-
Val
TAC
[ENA]
¢þ
>WENV180824089
ODJX01000645
[ODJX] human metagenome; G_DNA_Supragingival plaque
411
336
-
Val
TAC
[ENA]
¢þ
>WENV180831660
ODKC01000024
[ODKC] human metagenome; G_DNA_Supragingival plaque
40472
40397
-
Val
TAC
[ENA]
¢þ
>WENV180833738
ODKD01000153
[ODKD] human metagenome; G_DNA_Supragingival plaque
13033
12958
-
Val
TAC
[ENA]
¢þ
>WENV180835299
ODKE01001913
[ODKE] human metagenome; G_DNA_Supragingival plaque
5119
5044
-
Val
TAC
[ENA]
¢þ
>WENV180843786
ODKN01011857
[ODKN] human metagenome; G_DNA_Supragingival plaque
1488
1563
+
Val
TAC
[ENA]
¢þ
>WENV180847341
ODKT01064766
[ODKT] human metagenome; G_DNA_Supragingival plaque
193
118
-
Val
TAC
[ENA]
¢þ
>WENV180855097
ODKX01030733
[ODKX] human metagenome; G_DNA_Tongue dorsum
703
778
+
Val
TAC
[ENA]
¢þ
>WENV180859911
ODLD01007835
[ODLD] human metagenome; G_DNA_Supragingival plaque
1973
1898
-
Val
TAC
[ENA]
¢þ
>WENV180861432
ODLE01003764
[ODLE] human metagenome; G_DNA_Tongue dorsum
4761
4836
+
Val
TAC
[ENA]
¢þ
>WENV180862650
ODLF01000872
[ODLF] human metagenome; G_DNA_Buccal mucosa
3767
3692
-
Val
TAC
[ENA]
¢þ
>WENV180863851
ODLH01003164
[ODLH] human metagenome; G_DNA_Tongue dorsum
336
411
+
Val
TAC
[ENA]
¢þ
>WENV180864804
ODLI01000029
[ODLI] human metagenome; G_DNA_Buccal mucosa
7816
7891
+
Val
TAC
[ENA]
¢þ
>WENV180873732
ODLP01019412
[ODLP] human metagenome; G_DNA_Tongue dorsum
212
137
-
Val
TAC
[ENA]
¢þ
>WENV180883126
ODMC01001890
[ODMC] human metagenome; G_DNA_Tongue dorsum
6096
6171
+
Val
TAC
[ENA]
¢þ
>WENV180889690
ODMN01102721
[ODMN] human metagenome; G_DNA_Supragingival plaque
156
231
+
Val
TAC
[ENA]
¢þ
>WENV180891725
ODMQ01006994
[ODMQ] human metagenome; G_DNA_Supragingival plaque
457
532
+
Val
TAC
[ENA]
¢þ
>WENV180916760
ODTD01000964
[ODTD] human metagenome; G_DNA_Tongue dorsum
5424
5499
+
Val
TAC
[ENA]
¢þ
>WENV180920856
ODTH01033856
[ODTH] human metagenome; G_DNA_Tongue dorsum
237
162
-
Val
TAC
[ENA]
¢þ
>WENV180922161
ODTJ01001634
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1965
2040
+
Val
TAC
[ENA]
¢þ
>WENV180924737
ODTK01013897
[ODTK] human metagenome; G_DNA_Supragingival plaque
1930
1855
-
Val
TAC
[ENA]
¢þ
>WENV180928058
ODTM01012097
[ODTM] human metagenome; G_DNA_Supragingival plaque
896
971
+
Val
TAC
[ENA]
¢þ
>WENV180931489
ODTP01004894
[ODTP] human metagenome; G_DNA_Tongue dorsum
4994
5069
+
Val
TAC
[ENA]
¢þ
>WENV180937046
ODTV01006361
[ODTV] human metagenome; G_DNA_Buccal mucosa
256
181
-
Val
TAC
[ENA]
¢þ
>WENV180939614
ODTX01058233
[ODTX] human metagenome; G_DNA_Supragingival plaque
193
118
-
Val
TAC
[ENA]
¢þ
>WENV180943726
ODUC01002085
[ODUC] human metagenome; G_DNA_Supragingival plaque
10178
10253
+
Val
TAC
[ENA]
¢þ
>WENV180947378
ODUF01001007
[ODUF] human metagenome; G_DNA_Supragingival plaque
1587
1662
+
Val
TAC
[ENA]
¢þ
>WENV180947711
ODUG01000017
[ODUG] human metagenome; G_DNA_Tongue dorsum
110906
110831
-
Val
TAC
[ENA]
¢þ
>WENV180953977
ODUJ01000085
[ODUJ] human metagenome; G_DNA_Tongue dorsum
42825
42900
+
Val
TAC
[ENA]
¢þ
>WENV180958469
ODUL01005709
[ODUL] human metagenome; G_DNA_Supragingival plaque
2847
2772
-
Val
TAC
[ENA]
¢þ
>WENV180959964
ODUM01006470
[ODUM] human metagenome; G_DNA_Tongue dorsum
3442
3517
+
Val
TAC
[ENA]
¢þ
>WENV180964942
ODUO01056181
[ODUO] human metagenome; G_DNA_Supragingival plaque
181
106
-
Val
TAC
[ENA]
¢þ
>WENV180973130
ODUW01001378
[ODUW] human metagenome; G_DNA_Supragingival plaque
4624
4699
+
Val
TAC
[ENA]
¢þ
>WENV180977513
ODUZ01001412
[ODUZ] human metagenome; G_DNA_Tongue dorsum
9801
9876
+
Val
TAC
[ENA]
¢þ
>WENV180981776
ODVE01059380
[ODVE] human metagenome; G_DNA_Supragingival plaque
359
434
+
Val
TAC
[ENA]
¢þ
>WENV180984069
ODVF01097006
[ODVF] human metagenome; G_DNA_Supragingival plaque
162
237
+
Val
TAC
[ENA]
¢þ
>WENV180985851
ODVJ01021287
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1326
1401
+
Val
TAC
[ENA]
¢þ
>WENV180988309
ODVL01000562
[ODVL] human metagenome; G_DNA_Tongue dorsum
15294
15219
-
Val
TAC
[ENA]
¢þ
>WENV181001740
ODVW01008518
[ODVW] human metagenome; G_DNA_Buccal mucosa
593
518
-
Val
TAC
[ENA]
¢þ
>WENV181003177
ODVX01006381
[ODVX] human metagenome; G_DNA_Supragingival plaque
834
759
-
Val
TAC
[ENA]
¢þ
>WENV181008072
ODWE01001726
[ODWE] human metagenome; G_DNA_Supragingival plaque
3215
3140
-
Val
TAC
[ENA]
¢þ
>WENV181012689
ODWK01006881
[ODWK] human metagenome; G_DNA_Supragingival plaque
218
143
-
Val
TAC
[ENA]
¢þ
>WENV181019844
ODWU01019099
[ODWU] human metagenome; G_DNA_Supragingival plaque
1407
1332
-
Val
TAC
[ENA]
¢þ
>WENV181021346
ODWV01007500
[ODWV] human metagenome; G_DNA_Tongue dorsum
1805
1730
-
Val
TAC
[ENA]
¢þ
>WENV181025600
ODXB01007226
[ODXB] human metagenome; G_DNA_Buccal mucosa
45
120
+
Val
TAC
[ENA]
¢þ
>WENV181029796
ODXF01004255
[ODXF] human metagenome; G_DNA_Supragingival plaque
2349
2424
+
Val
TAC
[ENA]
¢þ
>WENV181034009
ODXN01052471
[ODXN] human metagenome; G_DNA_Tongue dorsum
184
259
+
Val
TAC
[ENA]
¢þ
>WENV181041347
ODXS01009908
[ODXS] human metagenome; G_DNA_Tongue dorsum
2552
2477
-
Val
TAC
[ENA]
¢þ
>WENV181043745
ODXV01000633
[ODXV] human metagenome; G_DNA_Tongue dorsum
11985
11910
-
Val
TAC
[ENA]
¢þ
>WENV181046870
ODXX01013778
[ODXX] human metagenome; G_DNA_Buccal mucosa
281
356
+
Val
TAC
[ENA]
¢þ
>WENV181049332
ODYD01000033
[ODYD] human metagenome; G_DNA_Supragingival plaque
29015
28941
-
Val
TAC
[ENA]
¢þ
>WENV181059931
ODYM01018501
[ODYM] human metagenome; G_DNA_Tongue dorsum
129
54
-
Val
TAC
[ENA]
¢þ
>WENV181069634
ODZZ01129215
[ODZZ] human metagenome; G_DNA_Tongue dorsum
131
56
-
Val
TAC
[ENA]
¢þ
>WENV181071004
OEAE01078287
[OEAE] human metagenome; G_DNA_Supragingival plaque
53
128
+
Val
TAC
[ENA]
¢þ
>WENV181076818
OEAP01014738
[OEAP] human metagenome; G_DNA_Supragingival plaque
2296
2371
+
Val
TAC
[ENA]
¢þ
>WENV181079787
OEAS01014900
[OEAS] human metagenome; G_DNA_Supragingival plaque
1031
1106
+
Val
TAC
[ENA]
¢þ
>WENV181083467
OEAV01007846
[OEAV] human metagenome; G_DNA_Supragingival plaque
640
715
+
Val
TAC
[ENA]
¢þ
>WENV181087050
OEAY01009659
[OEAY] human metagenome; G_DNA_Tongue dorsum
976
1051
+
Val
TAC
[ENA]
¢þ
>WENV181090931
OEBC01006727
[OEBC] human metagenome; G_DNA_Supragingival plaque
3598
3523
-
Val
TAC
[ENA]
¢þ
>WENV181097423
OECA01008661
[OECA] human metagenome; G_DNA_Tongue dorsum
2871
2946
+
Val
TAC
[ENA]
¢þ
>WENV181102826
OECT01011200
[OECT] human metagenome; G_DNA_Tongue dorsum
825
900
+
Val
TAC
[ENA]
¢þ
>WENV181107205
OEEI01003229
[OEEI] human metagenome; G_DNA_Supragingival plaque
3569
3644
+
Val
TAC
[ENA]
¢þ
>WENV181108702
OEEJ01000192
[OEEJ] human metagenome; G_DNA_Tongue dorsum
9837
9762
-
Val
TAC
[ENA]
¢þ
>WENV181114681
OEEO01003061
[OEEO] human metagenome; G_DNA_Supragingival plaque
1233
1158
-
Val
TAC
[ENA]
¢þ
>WENV181121343
OEFL01002590
[OEFL] human metagenome; G_DNA_Supragingival plaque
1373
1448
+
Val
TAC
[ENA]
¢þ
>WENV181123741
OEFQ01000690
[OEFQ] human metagenome; G_DNA_Supragingival plaque
2735
2660
-
Val
TAC
[ENA]
¢þ
>WENV181125758
OEFU01024799
[OEFU] human metagenome; G_DNA_Saliva
430
505
+
Val
TAC
[ENA]
¢þ
>WENV181130626
OEFY01031274
[OEFY] human metagenome; G_DNA_Throat
351
426
+
Val
TAC
[ENA]
¢þ
>WENV181136194
OEGI01001318
[OEGI] human metagenome; G_DNA_Supragingival plaque
7028
6953
-
Val
TAC
[ENA]
¢þ
>WENV181137985
OEGJ01064279
[OEGJ] human metagenome; G_DNA_Supragingival plaque
400
474
+
Val
TAC
[ENA]
¢þ
>WENV181141453
OEGT01005359
[OEGT] human metagenome; G_DNA_Throat
548
473
-
Val
TAC
[ENA]
¢þ
>WENV181143058
OEHM01000078
[OEHM] human metagenome; G_DNA_Supragingival plaque
80501
80426
-
Val
TAC
[ENA]
¢þ
>WENV181146857
OEHQ01032363
[OEHQ] human metagenome; G_DNA_Supragingival plaque
683
758
+
Val
TAC
[ENA]
¢þ
>WENV181150549
OEHW01003527
[OEHW] human metagenome; G_DNA_Tongue dorsum
7453
7528
+
Val
TAC
[ENA]
¢þ
>WENV181152939
OEIA01011408
[OEIA] human metagenome; G_DNA_Supragingival plaque
2244
2319
+
Val
TAC
[ENA]
¢þ
>WENV181156321
OEIE01009470
[OEIE] human metagenome; G_DNA_Supragingival plaque
1769
1694
-
Val
TAC
[ENA]
¢þ
>WENV181157446
OEIG01005954
[OEIG] human metagenome; G_DNA_Hard palate
2413
2488
+
Val
TAC
[ENA]
¢þ
>WENV181160049
OEIK01001593
[OEIK] human metagenome; G_DNA_Supragingival plaque
4524
4599
+
Val
TAC
[ENA]
¢þ
>WENV181177030
OEJR01133552
[OEJR] human metagenome; G_DNA_Saliva
210
135
-
Val
TAC
[ENA]
¢þ
>WENV181178259
OEJS01124463
[OEJS] human metagenome; G_DNA_Supragingival plaque
181
106
-
Val
TAC
[ENA]
¢þ
>WENV181178631
OEJT01000099
[OEJT] human metagenome; G_DNA_Supragingival plaque
8508
8433
-
Val
TAC
[ENA]
¢þ
>WENV181181211
OEJU01010225
[OEJU] human metagenome; G_DNA_Supragingival plaque
251
326
+
Val
TAC
[ENA]
¢þ
>WENV181182047
OEJV01001814
[OEJV] human metagenome; G_DNA_Supragingival plaque
7494
7569
+
Val
TAC
[ENA]
¢þ
>WENV181231725
OFEK01055523
[OFEK] activated sludge metagenome; Anaerobic digester
216
292
+
Val
TAC
[ENA]
¢þ
>WENV183746010
POVV01003620
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1303
1228
-
Val
TAC
[ENA]
¢þ
>C191065600
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
1639014
1638939
-
Val
TAC
-
¡û
>C191185727
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1504722
1504647
-
Val
TAC
-
¡û
>W1911541896
OPYL01000001
Bacteroidota
Dysgonomonas sp. Marseille-P4361 [OPYL]
345584
345661
+
Val
TAC
[ENA]
¡û
>W1911788811
QYCZ01000002
Bacteroidota
Bergeyella cardium 1 [QYCZ]
26468
26392
-
Val
TAC
[ENA]
¡û
>W1810464156
QAAD01000032
Bacteroidota
Mangrovibacterium marinum DSM 28823 [QAAD]
31101
31178
+
Val
TAC
[ENA]
¡û
>W1810464157
QAAD01000032
Bacteroidota
Mangrovibacterium marinum DSM 28823 [QAAD]
31246
31323
+
Val
TAC
[ENA]
¡û
>W1810464158
QAAD01000032
Bacteroidota
Mangrovibacterium marinum DSM 28823 [QAAD]
31390
31466
+
Val
TAC
[ENA]
¡û
>W1810583132
QEWX01000101
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
2614
2689
+
Val
TAC
[ENA]
¡û
>C151010265
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1060823
1060900
+
Val
TAC
[Ensembl]
¡û
>W1511584137
LAVB01000010
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
60362
60285
-
Val
TAC
[ENA]
¡û
>C131006662
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
627162
627239
+
Val
TAC
[Ensembl]
¡û
>W1610928962
LUDH01000002
Bacteroidota
Riemerella anatipestifer [LUDH]
290251
290328
+
Val
TAC
[ENA]
¡û
>W1610929000
LUDI01000003
Bacteroidota
Riemerella anatipestifer [LUDI]
21289
21366
+
Val
TAC
[ENA]
¡û
>W1610929346
LUDR01000019
Bacteroidota
Riemerella anatipestifer [LUDR]
21699
21776
+
Val
TAC
[ENA]
¡û
>W1610929397
LUDT01000013
Bacteroidota
Riemerella anatipestifer [LUDT]
23185
23262
+
Val
TAC
[ENA]
¡û
>W1610929440
LUDU01000002
Bacteroidota
Riemerella anatipestifer [LUDU]
291043
291120
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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