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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.130635 (41 seq.)
>W1711292646
LZXY01000005
Gammaproteobacteria
Glaciecola punicea [LZXY]
77660
77576
-
Leu
TAG
[ENA]
¡û
>W1711292662
LZXY01000008
Gammaproteobacteria
Glaciecola punicea [LZXY]
53442
53526
+
Leu
TAG
[ENA]
¡û
>C171071795
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598626
1598710
+
Leu
TAG
-
¡û
>C171071797
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
1598814
1598898
+
Leu
TAG
-
¡û
>C171071818
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
2853545
2853461
-
Leu
TAG
-
¡û
>W131176074
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102564
102480
-
Leu
TAG
[ENA]
¡û
>W131176078
ARJT01000026
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
102138
102054
-
Leu
TAG
[ENA]
¡û
>W131176090
ARJT01000032
Gammaproteobacteria
Salinimonas chungwhensis DSM 16280 [ARJT]
84801
84717
-
Leu
TAG
[ENA]
¡û
>W131221861
AUAV01000003
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
241251
241335
+
Leu
TAG
[ENA]
¡û
>W131221875
AUAV01000007
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
232046
232130
+
Leu
TAG
[ENA]
¡û
>WENV180358774
OBNQ01014275
[OBNQ] marine metagenome; ENVO 00002150
329
413
+
Leu
TAG
[ENA]
¢þ
>WENV180396317
OBPV01000002
[OBPV] marine metagenome; ENVO:00002010
101988
102072
+
Leu
TAG
[ENA]
¢þ
>WENV180396337
OBPV01000039
[OBPV] marine metagenome; ENVO:00002010
389
473
+
Leu
TAG
[ENA]
¢þ
>WENV180593758
OCOX01183292
[OCOX] marine metagenome; ENVO:00002010
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV181324834
OFLH01015250
[OFLH] marine metagenome; sea ice
379
463
+
Leu
TAG
[ENA]
¢þ
>W141224087
BAET01000004
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
68279
68363
+
Leu
TAG
[ENA]
¡û
>W141224102
BAET01000007
Gammaproteobacteria
Glaciecola punicea DSM 14233 = ACAM 611 [BAET]
92272
92188
-
Leu
TAG
[ENA]
¡û
>W141242072
CAHY01000006
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
102591
102675
+
Leu
TAG
[ENA]
¡û
>W141242104
CAHY01000044
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
102224
102308
+
Leu
TAG
[ENA]
¡û
>WENV182543387
OJBB01000008
[OJBB] seawater metagenome; Sea water
95452
95368
-
Leu
TAG
[ENA]
¢þ
>WENV182546450
OJBO01040407
[OJBO] seawater metagenome; Sea water
118
202
+
Leu
TAG
[ENA]
¢þ
>WENV182546869
OJBP01010770
[OJBP] seawater metagenome; Sea water
829
913
+
Leu
TAG
[ENA]
¢þ
>WENV182560204
OJDT01007669
[OJDT] seawater metagenome; Sea water
397
481
+
Leu
TAG
[ENA]
¢þ
>WENV182568161
OJEQ01003630
[OJEQ] seawater metagenome; Sea water
216
132
-
Leu
TAG
[ENA]
¢þ
>WENV182570671
OJFE01001299
[OJFE] seawater metagenome; Sea water
919
835
-
Leu
TAG
[ENA]
¢þ
>WENV182571002
OJFG01000021
[OJFG] seawater metagenome; Sea water
112089
112173
+
Leu
TAG
[ENA]
¢þ
>WENV182586139
OJHJ01003496
[OJHJ] seawater metagenome; Sea water
1768
1684
-
Leu
TAG
[ENA]
¢þ
>WENV182588717
OJHW01008744
[OJHW] seawater metagenome; Sea water
207
123
-
Leu
TAG
[ENA]
¢þ
>WENV183621199
OOFT01016474
[OOFT] marine metagenome; sea ice
178
262
+
Leu
TAG
[ENA]
¢þ
>WENV183624834
OOGE01017407
[OOGE] marine metagenome; sea ice
13
97
+
Leu
TAG
[ENA]
¢þ
>WENV170264378
CERD01029169
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
572
488
-
Leu
TAG
[ENA]
¢þ
>C181113237
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834667
2834751
+
Leu
TAG
-
¡û
>C181113239
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2834855
2834939
+
Leu
TAG
-
¡û
>C181113256
CP025115
Gammaproteobacteria
Alteromonas sp. MB-3u-76 [CP025115]
2979608
2979524
-
Leu
TAG
-
¡û
>W141814256
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96885
96801
-
Leu
TAG
[ENA]
¡û
>W141814258
JQFW01000027
Gammaproteobacteria
Alteromonas sp. LOR [JQFW]
96697
96613
-
Leu
TAG
[ENA]
¡û
>C161062227
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1904308
1904392
+
Leu
TAG
-
¡û
>C161062246
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
3132898
3132814
-
Leu
TAG
-
¡û
>C161086324
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4025438
4025354
-
Leu
TAG
-
¡û
>C161086346
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
758611
758527
-
Leu
TAG
-
¡û
>C131007947
CP003844
Gammaproteobacteria
Alteromonas macleodii str. 'English Channel 673' [CP003844]
3044786
3044702
-
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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