This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131310 (28 seq.)
>A171000185
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
87057
87134
+
Pro
GGG
-
¡û
>A171000494
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1882785
1882708
-
Pro
GGG
-
¡û
>A171000681
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
334750
334827
+
Pro
GGG
-
¡û
>A171002595
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
904668
904591
-
Pro
GGG
-
¡û
>A171002659
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1191574
1191651
+
Pro
GGG
-
¡û
>A171003334
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
546224
546147
-
Pro
GGG
-
¡û
>A171003764
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
337331
337408
+
Pro
GGG
-
¡û
>A171004237
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
484541
484464
-
Pro
GGG
-
¡û
>A171004288
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1906087
1906164
+
Pro
GGG
-
¡û
>A171004443
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
965156
965233
+
Pro
GGG
-
¡û
>A171006587
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1431106
1431183
+
Pro
GGG
-
¡û
>A171006650
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1179752
1179829
+
Pro
GGG
-
¡û
>A171007088
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
198108
198185
+
Pro
GGG
-
¡û
>At1953
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1325061
1324984
-
Pro
GGG
[Ensembl]
¡û
>WENV170675996
LDZQ01001688
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2647
2570
-
Pro
GGG
[ENA]
¢þ
>WENV170676296
LDZR01002225
[LDZR] terrestrial metagenome; oil reservoir sample K2
36057
35980
-
Pro
GGG
[ENA]
¢þ
>WENV170676968
LDZS01003815
[LDZS] terrestrial metagenome; oil reservoir sample K3
734
811
+
Pro
GGG
[ENA]
¢þ
>W1910200320
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
66359
66282
-
Pro
GGG
[ENA]
¡û
>W1910229988
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
530782
530705
-
Pro
GGG
[ENA]
¡û
>W1910597273
LANF01000010
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
132682
132605
-
Pro
GGG
[ENA]
¡û
>W1610000902
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
259918
259841
-
Pro
GGG
[ENA]
¡û
>W1610005303
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
12040
11963
-
Pro
GGG
[ENA]
¡û
>W1610005587
AKID01000109
Euryarchaeota
Thermococcus sp. PK [AKID]
22597
22520
-
Pro
GGG
[ENA]
¡û
>W1610548874
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
160084
160007
-
Pro
GGG
[ENA]
¡û
>W1610612458
LGET01000147
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
2647
2570
-
Pro
GGG
[ENA]
¡û
>W1610612801
LGFD01000004
Euryarchaeota
Thermococcus sibiricus [LGFD]
36057
35980
-
Pro
GGG
[ENA]
¡û
>W1610638246
LIXN01000018
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
64737
64660
-
Pro
GGG
[ENA]
¡û
>W1610717917
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
92075
91998
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK