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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131431 (21 seq.)
>WENV180254615
OBEQ010646079
[OBEQ] groundwater metagenome; groundwater
161
84
-
Pro
GGG
[ENA]
¢þ
>WENV180256776
OBEQ010851992
[OBEQ] groundwater metagenome; groundwater
831
754
-
Pro
GGG
[ENA]
¢þ
>WENV180269814
OBEQ012101592
[OBEQ] groundwater metagenome; groundwater
665
742
+
Pro
GGG
[ENA]
¢þ
>WENV180308546
OBJR01037746
[OBJR] soil metagenome; soil
326
249
-
Pro
GGG
[ENA]
¢þ
>WENV180356076
OBNJ01026061
[OBNJ] sediment metagenome; sediment
97
174
+
Pro
GGG
[ENA]
¢þ
>WENV181165482
OEIS01006391
[OEIS] soil metagenome; soil
571
648
+
Pro
GGG
[ENA]
¢þ
>WENV183660879
ORJL010062964
[ORJL] groundwater metagenome; groundwater
349
272
-
Pro
GGG
[ENA]
¢þ
>WENV183680898
ORMF010236908
[ORMF] groundwater metagenome; groundwater
317
240
-
Pro
GGG
[ENA]
¢þ
>WENV183681637
ORMF010339924
[ORMF] groundwater metagenome; groundwater
349
272
-
Pro
GGG
[ENA]
¢þ
>WENV183691971
ORMF011844677
[ORMF] groundwater metagenome; groundwater
390
313
-
Pro
GGG
[ENA]
¢þ
>WENV183692200
ORMF011878309
[ORMF] groundwater metagenome; groundwater
6516
6439
-
Pro
GGG
[ENA]
¢þ
>WENV183692714
ORMF011964431
[ORMF] groundwater metagenome; groundwater
468
545
+
Pro
GGG
[ENA]
¢þ
>WENV183695960
ORMF012476898
[ORMF] groundwater metagenome; groundwater
351
274
-
Pro
GGG
[ENA]
¢þ
>C191005676
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2180397
2180474
+
Pro
GGG
-
¡û
>W1911148459
NPEW01000077
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
17055
16978
-
Pro
GGG
[ENA]
¡û
>C161001644
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
2613066
2613143
+
Pro
GGG
[Ensembl]
¡û
>C161016841
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
4439062
4438985
-
Pro
GGG
[Ensembl]
¡û
>C161048024
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
2408125
2408048
-
Pro
GGG
-
¡û
>C161108102
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1808095
1808018
-
Pro
GGG
[Ensembl]
¡û
>W121103240
AKZI01000165
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
9959
9882
-
Pro
GGG
[ENA]
¡û
>WENV077936
AAFX01129571
Soil microbial communities from Minnesota Farm
516
437
-
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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