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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131437 (30 seq.)
>W1710879746
LMRW01000005
Actinomycetota
Agromyces sp. Soil535 [LMRW]
88602
88684
+
Tyr
GTA
[ENA]
¡û
>W1710921166
LNZG01000013
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
26413
26497
+
Tyr
GTA
[ENA]
¡û
>W1711061119
LRYC01000057
Actinomycetota
Microbacterium hominis [LRYC]
18897
18983
+
Tyr
GTA
[ENA]
¡û
>W131204579
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
557574
557660
+
Tyr
GTA
[ENA]
¡û
>W131162242
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
499906
499990
+
Tyr
GTA
[ENA]
¡û
>W131184638
ARTB01000002
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
722669
722585
-
Tyr
GTA
[ENA]
¡û
>W131235584
AULS01000002
Actinomycetota
Microbacterium luticocti DSM 19459 [AULS]
86
2
-
Tyr
GTA
[ENA]
¡û
>C012808
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
183370
183454
+
Tyr
GTA
[Ensembl]
¡û
>WENV180099551
NMRC01016698
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
17
101
+
Tyr
GTA
[ENA]
¢þ
>W141223224
BADB01000217
Actinomycetota
Microbacterium sp. B24 [BADB]
4630
4714
+
Tyr
GTA
[ENA]
¡û
>W141291984
JAUF01000030
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
40903
40817
-
Tyr
GTA
[ENA]
¡û
>WENV170191337
CEPD01009932
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
859
777
-
Tyr
GTA
[ENA]
¢þ
>WENV170277705
CERQ01015360
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
850
932
+
Tyr
GTA
[ENA]
¢þ
>C191056061
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
598885
598967
+
Tyr
GTA
-
¡û
>C191074892
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
2723245
2723160
-
Tyr
GTA
-
¡û
>C191092512
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
1592266
1592348
+
Tyr
GTA
-
¡û
>C141007882
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
219669
219753
+
Tyr
GTA
[Ensembl]
¡û
>W1810058112
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
123709
123627
-
Tyr
GTA
[ENA]
¡û
>W1810090105
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
455348
455431
+
Tyr
GTA
[ENA]
¡û
>W1810684453
QKXI01000005
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
153216
153130
-
Tyr
GTA
[ENA]
¡û
>W1511489530
JWSZ01000016
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
77445
77527
+
Tyr
GTA
[ENA]
¡û
>W1511529021
JYJB01000009
Actinomycetota
Microbacterium hydrocarbonoxydans SA35 [JYJB]
479999
480083
+
Tyr
GTA
[ENA]
¡û
>W1511691443
LFYU01001633
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
314
230
-
Tyr
GTA
[ENA]
¡û
>C161043615
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
3558761
3558677
-
Tyr
GTA
[Ensembl]
¡û
>C161076857
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
2618419
2618503
+
Tyr
GTA
[Ensembl]
¡û
>W1610742092
LMRW01000005
Actinomycetota
Agromyces sp. Soil535 [LMRW]
88602
88684
+
Tyr
GTA
[ENA]
¡û
>W1610902096
LRYC01000057
Actinomycetota
Microbacterium hominis [LRYC]
18897
18983
+
Tyr
GTA
[ENA]
¡û
>W1710534576
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
627962
627880
-
Tyr
GTA
[ENA]
¡û
>W1710540786
FNXD01000001
Actinomycetota
Leifsonia sp. CL154 [FNXD]
223361
223275
-
Tyr
GTA
[ENA]
¡û
>W1710568259
FOTM01000001
Actinomycetota
Leifsonia sp. CL147 [FOTM]
285492
285578
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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