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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131461 (16 seq.)
>W1711404427
MFYK01000017
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
43278
43201
-
Arg
GCG
[ENA]
¡û
>W1711404637
MFYP01000044
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
18206
18283
+
Arg
GCG
[ENA]
¡û
>W1711404717
MFYR01000012
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
83062
82985
-
Arg
GCG
[ENA]
¡û
>W1711582980
MNWP01000002
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
24597
24674
+
Arg
GCG
[ENA]
¡û
>WENV180263221
OBEQ011456849
[OBEQ] groundwater metagenome; groundwater
151
228
+
Arg
GCG
[ENA]
¢þ
>WENV181375028
OFQY01041026
[OFQY] wastewater metagenome; Exp Tend VB 10WW
623
546
-
Arg
GCG
[ENA]
¢þ
>WENV181383537
OFRG01041578
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
432
509
+
Arg
GCG
[ENA]
¢þ
>WENV183688426
ORMF011288798
[ORMF] groundwater metagenome; groundwater
2991
3068
+
Arg
GCG
[ENA]
¢þ
>W1910716976
MFXP01000012
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
14188
14265
+
Arg
GCG
[ENA]
¡û
>W1910717209
MFXV01000012
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_52_16 [MFXV]
12374
12451
+
Arg
GCG
[ENA]
¡û
>W1910721584
MGES01000010
Unclassified
Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_51_9 [MGES]
18227
18150
-
Arg
GCG
[ENA]
¡û
>C161050429
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
212432
212509
+
Arg
GCG
-
¡û
>C161050473
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
212518
212595
+
Arg
GCG
-
¡û
>C161050517
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
212518
212595
+
Arg
GCG
-
¡û
>C161050561
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
212518
212595
+
Arg
GCG
-
¡û
>C161050605
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
212518
212595
+
Arg
GCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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