This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131584 (13 seq.)
>A171000115
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1143185
1143111
-
Glu
TTC
-
¡û
>A171000916
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1519394
1519320
-
Glu
TTC
-
¡û
>A171007720
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1530086
1530012
-
Glu
TTC
-
¡û
>A173000070
CP002565
Euryarchaeota
Methanothrix soehngenii GP6 [CP002565]
981080
981004
-
Glu
TTC
-
¡û
>WENV180320438
OBKO01015028
[OBKO] soil metagenome; Alaskan Permafrost
66
142
+
Glu
TTC
[ENA]
¢þ
>WENV181416917
OGCL01179986
[OGCL] hot springs metagenome; Hot spring water
390
316
-
Glu
TTC
[ENA]
¢þ
>At1679
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1160328
1160254
-
Glu
TTC
[Ensembl]
¡û
>WENV170670479
LAHT01016767
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
525
602
+
Glu
TTC
[ENA]
¢þ
>WENV170686157
LFRM01129414
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
759
685
-
Glu
TTC
[ENA]
¢þ
>WENV170975681
MTKZ01001818
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1232
1158
-
Glu
TTC
[ENA]
¢þ
>WENV170977816
MTKZ01032439
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
477
403
-
Glu
TTC
[ENA]
¢þ
>WENV170978360
MTKZ01048411
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
80
6
-
Glu
TTC
[ENA]
¢þ
>W1630018554
LUYH01000256
Euryarchaeota
Methanosarcinales archaeon Methan_04 [LUYH]
579
503
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK