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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.132099 (24 seq.)
>W131208448
ATHJ01000140
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
3459
3382
-
Ile
GAT
[ENA]
¡û
>C171038042
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
144905
144982
+
Ile
GAT
-
¡û
>C171038045
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1356268
1356345
+
Ile
GAT
-
¡û
>C171038048
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1580394
1580471
+
Ile
GAT
-
¡û
>C171100848
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
144906
144983
+
Ile
GAT
-
¡û
>C171100851
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1356622
1356699
+
Ile
GAT
-
¡û
>C171100854
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1580747
1580824
+
Ile
GAT
-
¡û
>WENV180297421
OBJA01030310
[OBJA] soil metagenome; sediment, water from around vicinity
524
601
+
Ile
GAT
[ENA]
¢þ
>WENV180345756
OBLN01004411
[OBLN] sediment metagenome; sediment
2283
2360
+
Ile
GAT
[ENA]
¢þ
>WENV180356382
OBNK01021841
[OBNK] sediment metagenome; sediment
331
408
+
Ile
GAT
[ENA]
¢þ
>WENV181188786
OEOE01368846
[OEOE] activated sludge metagenome; Activated Sludge
234
157
-
Ile
GAT
[ENA]
¢þ
>WENV170006499
AMWB02027705
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
532
609
+
Ile
GAT
[ENA]
¢þ
>WENV170007073
AMWB02082009
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2321
2244
-
Ile
GAT
[ENA]
¢þ
>WENV170605211
FUWD010458489
[FUWD] metagenome; unknown
195
272
+
Ile
GAT
[ENA]
¢þ
>WENV170693683
LGVC01041617
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
200
123
-
Ile
GAT
[ENA]
¢þ
>WENV170698341
LGVF01317030
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
494
417
-
Ile
GAT
[ENA]
¢þ
>WENV170952106
MEHZ011583316
[MEHZ] marine metagenome; marine surface water
156
79
-
Ile
GAT
[ENA]
¢þ
>W1810338694
PUTT01000001
Thermodesulfobacteriota
Desulfobacteraceae bacterium SEEP-SAG9 [PUTT]
47679
47756
+
Ile
GAT
[ENA]
¡û
>SRA1047732
SRR035094.31346
454 Sequencing (SRP001815)
115
192
+
Ile
GAT
[SRA]
>SRA1047960
SRR035094.76326
454 Sequencing (SRP001815)
210
287
+
Ile
GAT
[SRA]
>SRA1049502
SRR035095.87566
454 Sequencing (SRP001816)
43
120
+
Ile
GAT
[SRA]
>SRA1050067
SRR035095.186694
454 Sequencing (SRP001816)
411
334
-
Ile
GAT
[SRA]
>ENV001998
AY933862
Environmental sample from ENV division of INSDC
164
241
+
Ile
GAT
[ENA]
>W1710600536
FUWN01000006
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
220977
221054
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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