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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13241 (71 seq.)
>W1710885354
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
228654
228566
-
Ser
CGA
[ENA]
¡û
>W1711617468
MPAM01000016
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
2398
2310
-
Ser
CGA
[ENA]
¡û
>W1711617514
MPAN01000013
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
5243
5155
-
Ser
CGA
[ENA]
¡û
>W1711617567
MPAO01000026
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
3615
3527
-
Ser
CGA
[ENA]
¡û
>W1711617616
MPAP01000017
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
23763
23851
+
Ser
CGA
[ENA]
¡û
>W1711617662
MPAQ01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
5636
5548
-
Ser
CGA
[ENA]
¡û
>W1711617760
MPAS01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
29443
29531
+
Ser
CGA
[ENA]
¡û
>W1711617815
MPAT01000016
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
29267
29355
+
Ser
CGA
[ENA]
¡û
>W1711617859
MPAU01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
29324
29412
+
Ser
CGA
[ENA]
¡û
>W1711622344
MPEA01000034
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
2504
2416
-
Ser
CGA
[ENA]
¡û
>W1711622394
MPEB01000047
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
2747
2659
-
Ser
CGA
[ENA]
¡û
>W1711622461
MPEC01000021
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
2445
2357
-
Ser
CGA
[ENA]
¡û
>W1711622521
MPED01000016
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
29324
29412
+
Ser
CGA
[ENA]
¡û
>W1711622628
MPEF01000077
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
3048
3136
+
Ser
CGA
[ENA]
¡û
>W1711622665
MPEG01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
29324
29412
+
Ser
CGA
[ENA]
¡û
>W1711622702
MPEH01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
29130
29218
+
Ser
CGA
[ENA]
¡û
>W1711622760
MPEI01000017
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
23751
23839
+
Ser
CGA
[ENA]
¡û
>W1711622817
MPEJ01000015
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
29267
29355
+
Ser
CGA
[ENA]
¡û
>W1711627181
MPLH01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
1066
1154
+
Ser
CGA
[ENA]
¡û
>W1711627263
MPLI01000011
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
5186
5098
-
Ser
CGA
[ENA]
¡û
>W1711627289
MPLJ01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
71039
71127
+
Ser
CGA
[ENA]
¡û
>W1711627531
MPLO01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
7683
7595
-
Ser
CGA
[ENA]
¡û
>W1711627590
MPLP01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
209074
209162
+
Ser
CGA
[ENA]
¡û
>W1711627637
MPLQ01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
49014
48926
-
Ser
CGA
[ENA]
¡û
>W1711627684
MPLR01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
62000
62088
+
Ser
CGA
[ENA]
¡û
>W1711627764
MPLS01000018
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
37381
37469
+
Ser
CGA
[ENA]
¡û
>C171019417
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
1246456
1246368
-
Ser
CGA
-
¡û
>C171032534
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
1215638
1215550
-
Ser
CGA
-
¡û
>C171037213
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1276424
1276336
-
Ser
CGA
-
¡û
>C171038898
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
1416644
1416556
-
Ser
CGA
-
¡û
>C171111827
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
1519311
1519399
+
Ser
CGA
-
¡û
>C012155
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
1325960
1325872
-
Ser
CGA
[Ensembl]
¡û
>W141075625
ATAZ01000079
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
29308
29396
+
Ser
CGA
[ENA]
¡û
>W141292187
JAUJ01000118
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
28955
29043
+
Ser
CGA
[ENA]
¡û
>WENV183511788
OMJG01004336
[OMJG] food metagenome; Cotija cheese
86
174
+
Ser
CGA
[ENA]
¢þ
>C181003770
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
1524705
1524617
-
Ser
CGA
-
¡û
>C181003834
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
1568798
1568710
-
Ser
CGA
-
¡û
>C181054938
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
1283973
1283885
-
Ser
CGA
-
¡û
>C191019055
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
1855242
1855330
+
Ser
CGA
-
¡û
>W09100487
AABH02000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
52804
52892
+
Ser
CGA
[ENA]
¡û
>C191135422
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
1225908
1225820
-
Ser
CGA
-
¡û
>C191137977
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
1336003
1335915
-
Ser
CGA
-
¡û
>C191146260
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
1274544
1274456
-
Ser
CGA
-
¡û
>W09127250
ACKV01000038
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
10487
10399
-
Ser
CGA
[ENA]
¡û
>W1910181178
BJLS01000006
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
70884
70972
+
Ser
CGA
[ENA]
¡û
>C141000466
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
1175591
1175503
-
Ser
CGA
[Ensembl]
¡û
>W1910810807
MUXD01000003
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
57351
57439
+
Ser
CGA
[ENA]
¡û
>W1910870946
NCWT01000001
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
4080
3992
-
Ser
CGA
[ENA]
¡û
>W1911533334
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
243000
243088
+
Ser
CGA
[ENA]
¡û
>W1911533485
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
367728
367816
+
Ser
CGA
[ENA]
¡û
>W1911533622
OKQW01000002
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
269249
269161
-
Ser
CGA
[ENA]
¡û
>W1911533945
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
1134765
1134677
-
Ser
CGA
[ENA]
¡û
>W1911538476
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
242868
242956
+
Ser
CGA
[ENA]
¡û
>W1911539185
OMPP01000002
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
195928
195840
-
Ser
CGA
[ENA]
¡û
>W1810705427
QMJH01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
67163
67251
+
Ser
CGA
[ENA]
¡û
>W1810705471
QMJI01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
70885
70973
+
Ser
CGA
[ENA]
¡û
>W1810705543
QMJK01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
71014
71102
+
Ser
CGA
[ENA]
¡û
>C151089435
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
75834
75746
-
Ser
CGA
[Ensembl]
¡û
>W1510013861
BBPK01000002
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
9301
9213
-
Ser
CGA
[ENA]
¡û
>WENV11100249
AEKF01000001
Food metagenome, Jonggazip commercial cabbage kimchi
70883
70971
+
Ser
CGA
[ENA]
¡û
>W1511346263
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
1069703
1069612
-
Ser
CGA
[ENA]
¡û
>W1511585384
LAYN01000003
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
60631
60719
+
Ser
CGA
[ENA]
¡û
>W1511585690
LAYU01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
608
520
-
Ser
CGA
[ENA]
¡û
>W1511585751
LAYV01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
95213
95125
-
Ser
CGA
[ENA]
¡û
>C121005822
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
1222388
1222300
-
Ser
CGA
[Ensembl]
¡û
>C161074420
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
1276652
1276564
-
Ser
CGA
-
¡û
>W1610061382
BCMO01000005
Bacillota
Leuconostoc mesenteroides [BCMO]
68215
68303
+
Ser
CGA
[ENA]
¡û
>W1610061423
BCMP01000010
Bacillota
Leuconostoc mesenteroides [BCMP]
96275
96363
+
Ser
CGA
[ENA]
¡û
>W1610747280
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
228654
228566
-
Ser
CGA
[ENA]
¡û
>W1710059047
BCMO01000005
Bacillota
Leuconostoc mesenteroides [BCMO]
68215
68303
+
Ser
CGA
[ENA]
¡û
>W1710059088
BCMP01000010
Bacillota
Leuconostoc mesenteroides [BCMP]
96275
96363
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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