This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.132448 (10 seq.)
>W1711335812
MBRE01000037
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
93571
93655
+
Tyr
GTA
[ENA]
¡û
>C025523
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2372804
2372888
+
Tyr
GTA
[Ensembl]
¡û
>WENV180012816
FMSI01022071
[FMSI] soil metagenome; Soil
5523
5604
+
Tyr
GTA
[ENA]
¢þ
>WENV181411533
OGCI01030269
[OGCI] hot springs metagenome; Hot spring water
982
898
-
Tyr
GTA
[ENA]
¢þ
>WENV181414613
OGCL01000819
[OGCL] hot springs metagenome; Hot spring water
13380
13296
-
Tyr
GTA
[ENA]
¢þ
>C181030459
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
93065
93149
+
Tyr
GTA
-
¡û
>C191001210
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2241812
2241893
+
Tyr
GTA
-
¡û
>C191085219
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1570397
1570478
+
Tyr
GTA
-
¡û
>C131004318
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
3455348
3455432
+
Tyr
GTA
[Ensembl]
¡û
>W1611066519
MBRE01000037
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
93571
93655
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK