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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133320 (19 seq.)
>A171001449
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1539780
1539854
+
Pro
CGG
-
¡û
>A171004517
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2581225
2581299
+
Pro
CGG
-
¡û
>A171004602
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1460800
1460726
-
Pro
CGG
-
¡û
>A171004739
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3749307
3749233
-
Pro
CGG
-
¡û
>A171006812
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1185303
1185229
-
Pro
CGG
-
¡û
>A178000170
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1109071
1108966
-
Pro
CGG
-
¡û
>A178000328
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1632006
1631909
-
Pro
CGG
-
¡û
>A178000492
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
579762
579867
+
Pro
CGG
-
¡û
>WENV170008192
AMZC01004098
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
5900
5826
-
Pro
CGG
[ENA]
¢þ
>WENV170684199
LFRM01025938
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
59211
59137
-
Pro
CGG
[ENA]
¢þ
>W1910228342
FNMU01000006
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
112565
112491
-
Pro
CGG
[ENA]
¡û
>W1910471813
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
15867
15941
+
Pro
CGG
[ENA]
¡û
>W1910582988
JWTK01000005
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
54240
54166
-
Pro
CGG
[ENA]
¡û
>W1910672555
MCNQ01000011
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
7997
8071
+
Pro
CGG
[ENA]
¡û
>W1911492135
OBDR01000006
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
8173
8247
+
Pro
CGG
[ENA]
¡û
>W1911633781
PVBU01000015
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
7869
7943
+
Pro
CGG
[ENA]
¡û
>W1911653208
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1556917
1556843
-
Pro
CGG
[ENA]
¡û
>W1610919862
LSRU01000038
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
24810
24736
-
Pseudo
CGG
[ENA]
¡û
>W1611052498
MAFX01000016
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
20613
20687
+
Pseudo
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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