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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13335 (53 seq.)
>W1711018577
LQXA01000048
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
20457
20366
-
Ser
GCT
[ENA]
¡û
>W1711079587
LSOE01000002
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
106351
106260
-
Ser
GCT
[ENA]
¡û
>W1711357166
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
1723476
1723567
+
Ser
GCT
[ENA]
¡û
>W1711357206
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
591437
591528
+
Ser
GCT
[ENA]
¡û
>W1711357285
MDHD01000414
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
12575
12666
+
Ser
GCT
[ENA]
¡û
>W1711357333
MDHE01000440
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
12658
12567
-
Ser
GCT
[ENA]
¡û
>W1711357358
MDHF01000157
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
12594
12685
+
Ser
GCT
[ENA]
¡û
>W1711357394
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2161463
2161554
+
Ser
GCT
[ENA]
¡û
>W1711357431
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
1569018
1569109
+
Ser
GCT
[ENA]
¡û
>W1711357475
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
165286
165377
+
Ser
GCT
[ENA]
¡û
>W1711357520
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
483465
483556
+
Ser
GCT
[ENA]
¡û
>W1711357589
MDHK01000055
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
11153
11062
-
Ser
GCT
[ENA]
¡û
>W1711357610
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
624252
624343
+
Ser
GCT
[ENA]
¡û
>W1711357655
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
601618
601709
+
Ser
GCT
[ENA]
¡û
>W1711360705
MDJW01000008
Actinomycetota
Clavibacter michiganensis [MDJW]
171013
170922
-
Ser
GCT
[ENA]
¡û
>W1711360764
MDJX01000266
Actinomycetota
Clavibacter michiganensis [MDJX]
16348
16439
+
Ser
GCT
[ENA]
¡û
>W1711360774
MDJY01000003
Actinomycetota
Clavibacter michiganensis [MDJY]
18002
17911
-
Ser
GCT
[ENA]
¡û
>W1711360850
MDJZ01000016
Actinomycetota
Clavibacter michiganensis [MDJZ]
371633
371724
+
Ser
GCT
[ENA]
¡û
>C006137
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
604058
604149
+
Ser
GCT
[Ensembl]
¡û
>WENV180033561
FTKK01563166
[FTKK] metagenome; soil
152
63
-
Ser
GCT
[ENA]
¢þ
>W141212784
AZQZ01000012
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
304389
304298
-
Ser
GCT
[ENA]
¡û
>C08003536
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
468300
468391
+
Ser
GCT
[Ensembl]
¡û
>C181048893
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2846433
2846342
-
Ser
GCT
-
¡û
>C181048915
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
452537
452628
+
Ser
GCT
-
¡û
>W1910839671
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2666329
2666420
+
Ser
GCT
[ENA]
¡û
>W1910839727
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1286506
1286415
-
Ser
GCT
[ENA]
¡û
>W1910839755
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2980172
2980081
-
Ser
GCT
[ENA]
¡û
>W1910839822
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
475163
475072
-
Ser
GCT
[ENA]
¡û
>W1910839865
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
676056
675965
-
Ser
GCT
[ENA]
¡û
>W1911748139
QWDZ01000014
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
12532
12441
-
Ser
GCT
[ENA]
¡û
>W1911748203
QWEA01000488
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
1502
1411
-
Ser
GCT
[ENA]
¡û
>W1911748216
QWEB01000014
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
12091
12000
-
Ser
GCT
[ENA]
¡û
>W1911748260
QWEC01000009
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
16123
16214
+
Ser
GCT
[ENA]
¡û
>W1911748302
QWED01000003
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
15686
15777
+
Ser
GCT
[ENA]
¡û
>W1911748347
QWEE01000013
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
14432
14523
+
Ser
GCT
[ENA]
¡û
>W1911749565
QWGS01000016
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
3790
3699
-
Ser
GCT
[ENA]
¡û
>W1911749611
QWGT01000013
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
16756
16847
+
Ser
GCT
[ENA]
¡û
>W1911749658
QWGU01000038
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
8387
8478
+
Ser
GCT
[ENA]
¡û
>W1911749693
QWGV01000006
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
11572
11663
+
Ser
GCT
[ENA]
¡û
>W1810277241
PSTR01000005
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
153920
153829
-
Ser
GCT
[ENA]
¡û
>W1810277292
PSTS01000013
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
47119
47210
+
Ser
GCT
[ENA]
¡û
>W1810277403
PSTV01000008
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
33865
33956
+
Ser
GCT
[ENA]
¡û
>W1810277449
PSTW01000010
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
33830
33921
+
Ser
GCT
[ENA]
¡û
>W1810282070
PSXY01000004
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
117968
117877
-
Ser
GCT
[ENA]
¡û
>W1810860777
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
648399
648308
-
Ser
GCT
[ENA]
¡û
>C151075631
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
487520
487611
+
Ser
GCT
[Ensembl]
¡û
>C151095692
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
414548
414639
+
Ser
GCT
-
¡û
>W1511352450
JROD01000011
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
21957
22048
+
Ser
GCT
[ENA]
¡û
>W1511570072
LAKL01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
19664
19755
+
Ser
GCT
[ENA]
¡û
>C131019524
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
476050
476141
+
Ser
GCT
[Ensembl]
¡û
>W1610867053
LQXA01000048
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
20457
20366
-
Ser
GCT
[ENA]
¡û
>W1610918497
LSOE01000002
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
106351
106260
-
Ser
GCT
[ENA]
¡û
>W1710604639
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
392031
392122
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK