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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13336 (79 seq.)
>W1711120610
LUGK01000051
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
10808
10896
+
Ser
CGA
[ENA]
¡û
>W1711167770
LVWX01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
56021
55933
-
Ser
CGA
[ENA]
¡û
>W1711167867
LVWY01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
56053
55965
-
Ser
CGA
[ENA]
¡û
>W1711185052
LWNA01000150
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
7339
7427
+
Ser
CGA
[ENA]
¡û
>W1711665947
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1278017
1277929
-
Ser
CGA
[ENA]
¡û
>W1711678782
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
563929
564017
+
Ser
CGA
[ENA]
¡û
>C171048655
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
222046
222134
+
Ser
CGA
-
¡û
>C171074171
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
795204
795292
+
Ser
CGA
-
¡û
>C171075507
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
959484
959572
+
Ser
CGA
-
¡û
>C171075634
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
790056
789968
-
Ser
CGA
-
¡û
>C171075728
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
791373
791285
-
Ser
CGA
-
¡û
>C171075814
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1120890
1120802
-
Ser
CGA
-
¡û
>C171081330
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1346552
1346640
+
Ser
CGA
-
¡û
>C171089475
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
741312
741224
-
Ser
CGA
-
¡û
>C171116212
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1846975
1846887
-
Ser
CGA
-
¡û
>W131204321
ATBQ01000090
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
4884
4972
+
Ser
CGA
[ENA]
¡û
>C011432
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
753898
753810
-
Ser
CGA
[Ensembl]
¡û
>C011587
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
746044
745956
-
Ser
CGA
[Ensembl]
¡û
>W141037873
ALPY01000016
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
39187
39275
+
Ser
CGA
[ENA]
¡û
>WENV181660196
OGOF01007762
[OGOF] human gut metagenome; faeces
2663
2751
+
Ser
CGA
[ENA]
¢þ
>WENV181723511
OGPW01008181
[OGPW] human gut metagenome; faeces
180
92
-
Ser
CGA
[ENA]
¢þ
>WENV181733740
OGQE01009289
[OGQE] human gut metagenome; faeces
2184
2272
+
Ser
CGA
[ENA]
¢þ
>W141228047
BALP01000116
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
2102
2190
+
Ser
CGA
[ENA]
¡û
>WENV182349987
OIBE01001083
[OIBE] human gut metagenome; feces
3983
4071
+
Ser
CGA
[ENA]
¢þ
>WENV182369990
OICS01000566
[OICS] human gut metagenome; feces
8499
8587
+
Ser
CGA
[ENA]
¢þ
>WENV182382016
OIDR01006479
[OIDR] human gut metagenome; feces
103
15
-
Ser
CGA
[ENA]
¢þ
>W141264124
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
935217
935129
-
Ser
CGA
[ENA]
¡û
>W141264930
CCET01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
52906
52994
+
Ser
CGA
[ENA]
¡û
>W141265016
CCEU01000003
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
94306
94218
-
Ser
CGA
[ENA]
¡û
>WENV183123201
OLNW01000377
[OLNW] human gut metagenome; faeces
25726
25814
+
Ser
CGA
[ENA]
¢þ
>WENV183166879
OLOY01002207
[OLOY] human gut metagenome; faeces
3074
3162
+
Ser
CGA
[ENA]
¢þ
>WENV183772308
PPYF01016723
[PPYF] human gut metagenome; stool from patient with Crohn's disease
62349
62261
-
Ser
CGA
[ENA]
¢þ
>WENV183785839
PPYF01298401
[PPYF] human gut metagenome; stool from patient with Crohn's disease
30145
30233
+
Ser
CGA
[ENA]
¢þ
>C181025021
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
735551
735463
-
Ser
CGA
-
¡û
>C181074569
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
1137726
1137638
-
Ser
CGA
-
¡û
>C181076097
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
900385
900297
-
Ser
CGA
-
¡û
>C181221129
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
741623
741535
-
Ser
CGA
-
¡û
>C191063464
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
932189
932101
-
Ser
CGA
-
¡û
>W09101747
AAGQ01000014
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
21086
21174
+
Ser
CGA
[ENA]
¡û
>C191089954
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
182416
182504
+
Ser
CGA
-
¡û
>C191224740
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
807921
807833
-
Ser
CGA
-
¡û
>W1910180835
BJLK01000005
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
61819
61731
-
Ser
CGA
[ENA]
¡û
>W1910180910
BJLM01000042
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
564
476
-
Ser
CGA
[ENA]
¡û
>W1910180984
BJLO01000032
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
2202
2290
+
Ser
CGA
[ENA]
¡û
>W1910182494
BJMY01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
30501
30413
-
Ser
CGA
[ENA]
¡û
>W1910186294
CCDS01000013
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
44606
44694
+
Ser
CGA
[ENA]
¡û
>W1910186374
CCDT01000005
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
48054
48142
+
Ser
CGA
[ENA]
¡û
>W1911631631
PUFG01000061
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
37627
37539
-
Ser
CGA
[ENA]
¡û
>W1911702062
QNXB01000006
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
47533
47621
+
Ser
CGA
[ENA]
¡û
>W1810000506
BEWJ01000010
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
44718
44806
+
Ser
CGA
[ENA]
¡û
>W1810190881
PKKE01000011
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
4963
4875
-
Ser
CGA
[ENA]
¡û
>W1810445115
PZKI01000005
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
30517
30605
+
Ser
CGA
[ENA]
¡û
>W1810744661
QOVB01000006
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
57088
57000
-
Ser
CGA
[ENA]
¡û
>W10123991
AEAT01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
1704
1616
-
Ser
CGA
[ENA]
¡û
>C11112504
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
745637
745549
-
Ser
CGA
[Ensembl]
¡û
>C11112602
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
809204
809116
-
Ser
CGA
[Ensembl]
¡û
>W11130828
AEAT01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
1704
1616
-
Ser
CGA
[ENA]
¡û
>W1511510261
JXRV01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
30774
30686
-
Ser
CGA
[ENA]
¡û
>W11152255
AEXU01000139
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
6532
6444
-
Ser
CGA
[ENA]
¡û
>W1511694245
LGAS01000026
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
846
758
-
Ser
CGA
[ENA]
¡û
>W1511698297
LGHR01000009
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
61875
61787
-
Ser
CGA
[ENA]
¡û
>C161057631
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
757319
757231
-
Ser
CGA
[Ensembl]
¡û
>W121009772
AGFO01000018
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
56856
56768
-
Ser
CGA
[ENA]
¡û
>W121010060
AGHW01000052
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
56960
56872
-
Ser
CGA
[ENA]
¡û
>W1610033132
AZCR01000104
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2165
2253
+
Ser
CGA
[ENA]
¡û
>W1610033727
AZDE01000052
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
5189
5277
+
Ser
CGA
[ENA]
¡û
>W1610036639
AZFL01000014
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
738
650
-
Ser
CGA
[ENA]
¡û
>W1610044404
BBAN01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
21230
21318
+
Ser
CGA
[ENA]
¡û
>W1610120880
CZPS01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
43114
43202
+
Ser
CGA
[ENA]
¡û
>W1610527967
JQAV01000008
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
29389
29477
+
Ser
CGA
[ENA]
¡û
>W1610529655
JQCG01000007
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
39219
39307
+
Ser
CGA
[ENA]
¡û
>W1610931807
LUGK01000051
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
10808
10896
+
Ser
CGA
[ENA]
¡û
>W1610977839
LVWX01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
56021
55933
-
Ser
CGA
[ENA]
¡û
>W1610977936
LVWY01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
56053
55965
-
Ser
CGA
[ENA]
¡û
>W1710030404
AZCR01000104
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2165
2253
+
Ser
CGA
[ENA]
¡û
>W1710030905
AZDE01000052
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
5189
5277
+
Ser
CGA
[ENA]
¡û
>W1710033678
AZFL01000014
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
738
650
-
Ser
CGA
[ENA]
¡û
>W1710123584
CZPS01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
43114
43202
+
Ser
CGA
[ENA]
¡û
>W1710631245
JQCG01000007
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
39219
39307
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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